RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	KRT6A	P02538	564 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	C9	P02748	559 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	KRT6B	P04259	564 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	CHRNG	P07510	517 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PCNA	P12004	261 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	JUP	P14923	745 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	CSRP1	P21291	193 aa	Known RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	SDHB	P21912	280 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	GRIA3	P42263	894 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	CCR10	P46092	362 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	KRT6C	P48668	564 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	GYS2	P54840	703 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PPP1CA	P62136	330 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	GNGT1	P63211	74 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	REEP5	Q00765	189 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	MEF2A	Q02078	507 aa	Predicted RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	TRAF3	Q13114	568 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	SQSTM1	Q13501	440 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	DOC2A	Q14183	400 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	RBBP5	Q15291	538 aa	Known RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	TBCC	Q15814	346 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	CPSF6	Q16630	551 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	GGTA1P	Q4G0N0	100 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PHF19	Q5T6S3	580 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	MED27	Q6P2C8	311 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	RBM44	Q6ZP01	1051 aa	Known RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	SLCO4C1	Q6ZQN7	724 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM47E	Q6ZV65	393 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PRSS42	Q7Z5A4	293 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	KMT5C	Q86Y97	462 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM20C	Q8IXL6	584 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	CDYL2	Q8N8U2	506 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	TTL	Q8NG68	377 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	METTL6	Q8TCB7	284 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	TMEM74	Q96NL1	305 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PLCD4	Q9BRC7	762 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	SLC29A3	Q9BZD2	475 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	NSRP1	Q9H0G5	558 aa	Known RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	KLHL25	Q9H0H3	589 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	ELOVL6	Q9H5J4	265 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	FANCE	Q9HB96	536 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PDE7B	Q9NP56	450 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PFDN4	Q9NQP4	134 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	SH2B3	Q9UQQ2	575 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	PCDHGA11	Q9Y5H2	935 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM186A	A6NE01	2351 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	PCNX2	A6NKB5	2137 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ANKDD1B	A6NHY2	528 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	SLC9B1P1	A6NJY1	282 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	HAT1	O14929	419 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	AZIN1	O14977	448 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TOX3	O15405	576 aa	Predicted RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ITM2A	O43736	263 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	SNN	O75324	88 aa	Predicted RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	KIT	P10721	976 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	UROS	P10746	265 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	PVR	P15151	417 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	EZR	P15311	586 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ST6GAL1	P15907	406 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	MPST	P25325	297 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	VARS	P26640	1264 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	SEPHS1	P49903	392 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	RPL14	P50914	215 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	NOVA1	P51513	510 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	HK2	P52789	917 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	RPS15A	P62244	130 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	SH3BP2	P78314	561 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	CSNK1G2	P78368	415 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	LETMD1	Q6P1Q0	360 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	CYB5D1	Q6P9G0	228 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	RGS9BP	Q6ZS82	235 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	GLRX5	Q86SX6	157 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	SYVN1	Q86TM6	617 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	WDR75	Q8IWA0	830 aa	Known RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	CHCHD4	Q8N4Q1	142 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ZNF655	Q8N720	491 aa	Predicted RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ZNF781	Q8N8C0	355 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	L3MBTL4	Q8NA19	623 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	ABHD11	Q8NFV4	315 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	OR6Y1	Q8NGX8	325 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	FLVCR1-AS1	Q8TAF5	88 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	RERG	Q96A58	199 aa	Predicted RBP	11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	WDR34	Q96EX3	536 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TCTN2	Q96GX1	697 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	FAR2	Q96K12	515 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	CCDC74B	Q96LY2	380 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	C7orf26	Q96N11	449 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TRAPPC9	Q96Q05	1148 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TWSG1	Q9GZX9	223 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	CCDC134	Q9H6E4	229 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	IRAK4	Q9NWZ3	460 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	TMEM9	Q9P0T7	183 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	KLHL20	Q9Y2M5	609 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	RNF11	Q9Y3C5	154 aa		11.42	□□□□□ -0.58
DDB1-223	ENST00000543658	DMD	P11532	3685 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms