RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 RPS17P08708 135 aaKnown RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 C1GALT1C1LP0DN25 315 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 FGF5P12034 268 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 PVRP15151 417 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 EEF1DP29692 281 aaKnown RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 AGTR2P50052 363 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 RPS15AP62244 130 aaKnown RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 CSNK1G2P78368 415 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 GTF2H2Q13888 395 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 E2F2Q14209 437 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 RTP5Q14D33 572 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 HIST2H2ACQ16777 129 aaPredicted RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 TCTE1Q5JU00 501 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 MANEAQ5SRI9 462 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 C10orf62Q5T681 223 aaPredicted RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 YOD1Q5VVQ6 348 aaPredicted RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 LIPMQ5VYY2 423 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 FCRL6Q6DN72 434 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 HIST2H2AA3Q6FI13 130 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 GTF2H2CQ6P1K8 395 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 CEACAM20Q6UY09 585 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 SLCO4C1Q6ZQN7 724 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 RNF44Q7L0R7 432 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 FAM129CQ86XR2 697 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 KRT78Q8N1N4 520 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 TEX9Q8N6V9 391 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 BMPERQ8N8U9 685 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 ARMC2Q8NEN0 867 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 TTLQ8NG68 377 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 PPP4R1Q8TF05 950 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 N4BP2L2Q92802 583 aaPredicted RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 NEIL2Q969S2 332 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 NXPE2Q96DL1 559 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 PTCD3Q96EY7 689 aaKnown RBP11.69□□□□□ -0.54
DDX55-210ENST00000543016 PPM1MQ96MI6 270 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 PRAP1Q96NZ9 151 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 FAM111AQ96PZ2 611 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 TAAR9Q96RI9 348 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 ZFYVE21Q9BQ24 234 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 TRMOQ9BU70 441 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 SLC6A20Q9NP91 592 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 KCNK9Q9NPC2 374 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 FGF21Q9NSA1 209 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 ABCF3Q9NUQ8 709 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 NKIRAS1Q9NYS0 192 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 PILRAQ9UKJ1 303 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 RARRES3Q9UL19 164 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 AP1M2Q9Y6Q5 423 aa11.69□□□□□ -0.54
DDX55-210ENST00000543016 IGKV1-8A0A0C4DH67 115 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 TRBC2A0A5B9 178 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SASH3O75995 380 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 WFS1O76024 890 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SNUPNO95149 360 aaKnown RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 OTCP00480 354 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 FGF3P11487 239 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 CDH1P12830 882 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 CREB1P16220 341 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 CD82P27701 267 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 RBMS1P29558 406 aaKnown RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 SERPINB1P30740 379 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 AHRP35869 848 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SERPINB5P36952 375 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 HNF4AP41235 474 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ETV4P43268 484 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 EMP3P54852 163 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 IRF8Q02556 426 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 TUBB3Q13509 450 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 CAMK2BQ13554 666 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZIC1Q15915 447 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 C18orf21Q32NC0 220 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.68□□□□□ -0.54
DDX55-210ENST00000543016 HSP90B2PQ58FF3 399 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZNF678Q5SXM1 525 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 DCAF12Q5T6F0 453 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 LIPJQ5W064 366 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 FBXO42Q6P3S6 717 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 TLDC1Q6P9B6 456 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ADCK2Q7Z695 626 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 TMPRSS11BQ86T26 416 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 PPP1R3BQ86XI6 285 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 MCATQ8IVS2 390 aaKnown RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 GPR135Q8IZ08 494 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZNF655Q8N720 491 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZNF483Q8TF39 744 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 RERGQ96A58 199 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 ARL8AQ96BM9 186 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZNF285Q96NJ3 590 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 NTMT1Q9BV86 223 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SCNM1Q9BWG6 230 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 IPPKQ9H8X2 491 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 MED4Q9NPJ6 270 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 CUEDC1Q9NWM3 386 aaPredicted RBP11.68□□□□□ -0.54
DDX55-210ENST00000543016 ZNF446Q9NWS9 450 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SLC39A1Q9NY26 324 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 ADGRE2Q9UHX3 823 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 PCTPQ9UKL6 214 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 SATB2Q9UPW6 733 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 TSC22D4Q9Y3Q8 395 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 PCDHGA7Q9Y5G6 932 aa11.68□□□□□ -0.54
DDX55-210ENST00000543016 CACNA1AO00555 2505 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms