RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DSC2Q02487 901 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 TARBP2Q15633 366 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 MPEG1Q2M385 716 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 LGALSLQ3ZCW2 172 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 KRT78Q8N1N4 520 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 DPP10Q8N608 796 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SENP8Q96LD8 212 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 BBS4Q96RK4 519 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 FIZ1Q96SL8 496 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 MAP3K3Q99759 626 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 CRB3Q9BUF7 120 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 RBCK1Q9BYM8 510 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ZYG11BQ9C0D3 744 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 DHX35Q9H5Z1 703 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 C3orf14Q9HBI5 128 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 NMRAL1Q9HBL8 299 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 EPHA6Q9UF33 1036 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 AFF4Q9UHB7 1163 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 POLG2Q9UHN1 485 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 PTCH2Q9Y6C5 1203 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 TEX13CA0A0J9YWL9 993 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM191CA6NGB0 347 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 CXCL11O14625 94 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SIGLEC5O15389 551 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SEC14L5O43304 696 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 PLOD3O60568 738 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ADRB1P08588 477 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 RD3LP0DJH9 198 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 CTPS1P17812 591 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF143P52747 638 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ROR1Q01973 937 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SIGLEC14Q08ET2 396 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 VEPH1Q14D04 833 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 NCF4Q15080 339 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SSX2Q16385 188 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 TIGD6Q17RP2 521 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 RGS7BPQ6MZT1 257 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ANGPTL8Q6UXH0 198 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ZPBP2Q6X784 338 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 KIAA0907Q7Z7F0 614 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 PTRH1Q86Y79 214 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 PSTKQ8IV42 348 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 MINDY1Q8N5J2 469 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ART5Q96L15 291 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 C12orf42Q96LP6 360 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 SIGLEC11Q96RL6 698 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 CMSS1Q9BQ75 279 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 QRSL1Q9H0R6 528 aaKnown RBP9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ANKRD19PQ9H560 264 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 RIOX1Q9H6W3 641 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 MED9Q9NWA0 146 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 CYTH4Q9UIA0 394 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 PADI2Q9Y2J8 665 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ASB4Q9Y574 426 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ANKRD12Q6UB98 2062 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 A0A0G2JLL6 359 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FAM170BA6NMN3 283 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FAM86B1E9PN63 330 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 UBXN8O00124 270 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NR5A2O00482 541 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PDCD5O14737 125 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TBX3O15119 743 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SLC16A6O15403 523 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PROM1O43490 865 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CA12O43570 354 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CHP2O43745 196 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 RBBP9O75884 186 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 LY86O95711 162 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 S100A8P05109 93 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FGF2P09038 288 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HLA-EP13747 358 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SPRP35270 261 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SPAM1P38567 509 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MAGEA12P43365 314 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ASMTP46597 345 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MAP2K3P46734 347 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ATP5OP48047 213 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 BCAT1P54687 386 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GABREP78334 506 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 RPP30P78346 268 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GBX1Q14549 363 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GRM3Q14832 879 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PFKFB4Q16877 469 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 UGT3A2Q3SY77 523 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PRAMEF19Q5SWL8 479 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 AHSA2Q719I0 299 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PRRT2Q7Z6L0 340 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CLEC14AQ86T13 490 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SLC9B2Q86UD5 537 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 C12orf45Q8N5I9 185 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 BVESQ8NE79 360 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ITFG1Q8TB96 612 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 C2CD4CQ8TF44 421 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 COA7Q96BR5 231 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ATXN7L3BQ96GX2 97 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 VRK1Q99986 396 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ACE2Q9BYF1 805 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SLC29A3Q9BZD2 475 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SEMA4CQ9C0C4 833 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GLOD4Q9HC38 313 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms