RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FAM86B1Q8N7N1 296 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CLDN22Q8N7P3 220 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 OR1M1Q8NGA1 313 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 OR8D4Q8NGM9 314 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 OR2T4Q8NH00 348 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 WDR36Q8NI36 951 aaKnown RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 CHTF18Q8WVB6 975 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 AP3S1Q92572 193 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 NSMAFQ92636 917 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 UCN3Q969E3 161 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 FUBP1Q96AE4 644 aaKnown RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 P2RY11Q96G91 374 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 RTP3Q9BQQ7 232 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CINPQ9BW66 212 aaPredicted RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 ERVK-6Q9BXR3 956 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 RASSF1Q9NS23 344 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 DCAF13Q9NV06 445 aaKnown RBP12.08□□□□□ -0.48
USP3-203ENST00000538686 DNAJC11Q9NVH1 559 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 ZNF541Q9H0D2 1346 aa12.08□□□□□ -0.48
USP3-203ENST00000538686 CITO14578 2027 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ASB14A6NK59 587 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 C9JVG2 144 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 F5H423 210 aaPredicted RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 ACKR2O00590 384 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 EIF1BO60739 113 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 PRAMEF1O95521 474 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 MPC2O95563 127 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 DHFRP00374 187 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 FGF2P09038 288 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PRR35P0CG20 571 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 FPR1P21462 350 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 DNAJA1P31689 397 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 RPS19P39019 145 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 EIF1P41567 113 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 MAGEA2P43356 314 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZFP36L2P47974 494 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 WNT7BP56706 349 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 IRF5Q13568 498 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PWP1Q13610 501 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZNF284Q2VY69 593 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 NHLRC3Q5JS37 347 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CD276Q5ZPR3 534 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 NCBP2-AS2Q69YL0 99 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 DET1Q7L5Y6 550 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CHMP1BQ7LBR1 199 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 GPR149Q86SP6 731 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZFAND4Q86XD8 727 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZNF548Q8NEK5 533 aaPredicted RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 MCPH1Q8NEM0 835 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 OR4F6Q8NGB9 312 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 GGHQ92820 318 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 MTERF3Q96E29 417 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 HRASLS5Q96KN8 279 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZNF583Q96ND8 569 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 SLC4A9Q96Q91 983 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 TMEM175Q9BSA9 504 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 BARHL1Q9BZE3 327 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 TINAGL1Q9GZM7 467 aaPredicted RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 ESRP2Q9H6T0 727 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 NLKQ9UBE8 527 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 AASSQ9UDR5 926 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 SEC14L4Q9UDX3 406 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 MGAT4BQ9UQ53 548 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PCDHGA9Q9Y5G4 932 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 ELOVL7A1L3X0 281 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ZNF670-ZNF695F2Z2N8 137 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 SGK494L7N484 410 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 DDX39AO00148 427 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 AIPO00170 330 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 WWP2O00308 870 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CXCR6O00574 342 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 SGCEO43556 437 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PLATP00750 562 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PIGRP01833 764 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ADRB1P08588 477 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 JUPP14923 745 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CSHL1Q14406 222 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 ATP6AP1LQ52LC2 224 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 RGS7BPQ6MZT1 257 aaPredicted RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 DLEU7Q6UYE1 221 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 MCATQ8IVS2 390 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 ZNF567Q8N184 647 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 OR5B17Q8NGF7 314 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 PHF21BQ96EK2 531 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CSPG4P5Q96PW8 444 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 GFM1Q96RP9 751 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 MGLLQ99685 303 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 NUSAP1Q9BXS6 441 aaKnown RBP12.07□□□□□ -0.48
USP3-203ENST00000538686 EQTNQ9NQ60 294 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 GSN-AS1Q9NRJ2 163 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 CLCA3PQ9Y6N3 262 aa12.07□□□□□ -0.48
USP3-203ENST00000538686 TRABD2BA6NFA1 517 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SELENOFO60613 162 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 HTR3BO95264 441 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 RASGRP1O95267 797 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 PTHP01270 115 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 IL1AP01583 271 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 CNPP09543 421 aaKnown RBP12.06□□□□□ -0.48
USP3-203ENST00000538686 SELLP14151 372 aa12.06□□□□□ -0.48
USP3-203ENST00000538686 SLC19A1P41440 591 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms