RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TRAM1L1Q8N609 369 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 CDYL2Q8N8U2 506 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 Q8N9G6 341 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 OR9I1Q8NGQ6 314 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 DTX3LQ8TDB6 740 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 GLMNQ92990 594 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 SCARF2Q96GP6 870 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 CDK15Q96Q40 435 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ZSCAN5AQ9BUG6 496 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 TRNAU1APQ9NX07 287 aaKnown RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 POMPQ9Y244 141 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ARHGEF17Q96PE2 2063 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 TRBV23OR9-2A0A075B6M9 112 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CFAP99D6REC4 459 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 AGRPO00253 132 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 EIF3FO00303 357 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 OR7A17O14581 309 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 EML2O95834 649 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SNRPB2P08579 225 aaKnown RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 GPX3P22352 226 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ACTR1BP42025 376 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PTDSS1P48651 473 aaKnown RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SESN3P58005 492 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ERVPABLB-1P60509 514 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ACTR1AP61163 376 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 XKR7Q5GH72 579 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SULT1C3Q6IMI6 304 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 OGFOD3Q6PK18 319 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CHST15Q7LFX5 561 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PROSER1Q86XN7 944 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 UBTD2Q8WUN7 234 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 RHBDF1Q96CC6 855 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 OR2M4Q96R27 311 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CDRT15Q96T59 188 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SERPINI1Q99574 410 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SLC25A23Q9BV35 468 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 OR2AG1Q9H205 316 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 RDH14Q9HBH5 336 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PFDN4Q9NQP4 134 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 WWOXQ9NZC7 414 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 STX18Q9P2W9 335 aaKnown RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 STOML1Q9UBI4 398 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 C15orf41Q9Y2V0 281 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PMS2P1A4D2B8 440 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 FBP2O00757 339 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CSO75390 466 aaKnown RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PRR35P0CG20 571 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 MSH3P20585 1137 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CCNG1P51959 295 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SLC34A1Q06495 639 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 HSPA14Q0VDF9 509 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 BOP1Q14137 746 aaKnown RBP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 GBX1Q14549 363 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 MMEL1Q495T6 779 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 OGFOD2Q6N063 350 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 PAOXQ6QHF9 649 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 GALNT13Q8IUC8 556 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLIP1-208ENST00000537004 DDHD1Q8NEL9 900 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ZDHHC1Q8WTX9 485 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 NAT6Q93015 286 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ATP6V1E2Q96A05 226 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 TMEM79Q9BSE2 394 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 GSDMCQ9BYG8 508 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 CD244Q9BZW8 370 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 IPPKQ9H8X2 491 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 LRIT1Q9P2V4 623 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ATXN10Q9UBB4 475 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 KCNK6Q9Y257 313 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 RAXQ9Y2V3 346 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 AK5Q9Y6K8 562 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 RNF215Q9Y6U7 377 aa11.55□□□□□ -0.56
CLIP1-208ENST00000537004 ATMQ13315 3056 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 PCM1Q15154 2024 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 A0A1W2PNU3 283 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-208ENST00000537004 A0A1W2PQM1 296 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 CFLARO15519 480 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 OTCP00480 354 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 CAPN1P07384 714 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 IDO1P14902 403 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 ZNF8P17098 575 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-208ENST00000537004 GDF5P43026 501 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 PDX1P52945 283 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 NME5P56597 212 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 CCL7P80098 99 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 TRAF3Q13114 568 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 CCNIQ14094 377 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 C14orf28Q4W4Y0 310 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 PIGGQ5H8A4 983 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 REP15Q6BDI9 236 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 TLDC1Q6P9B6 456 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 SCIMPQ6UWF3 145 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 MBOAT1Q6ZNC8 495 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 B3GNT8Q7Z7M8 397 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 FUNDC1Q8IVP5 155 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 RAVER1Q8IY67 606 aaKnown RBP11.54□□□□□ -0.56
CLIP1-208ENST00000537004 NAGSQ8N159 534 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 MIER2Q8N344 545 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 OR4F6Q8NGB9 312 aa11.54□□□□□ -0.56
CLIP1-208ENST00000537004 OR2T11Q8NH01 316 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms