RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ADGRF3Q8IZF5 1079 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 AVL9Q8NBF6 648 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 OR4K1Q8NGD4 311 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 HUS1BQ8NHY5 278 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 PRAP1Q96NZ9 151 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 PITHD1Q9GZP4 211 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 SPNS1Q9H2V7 528 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 TSC22D4Q9Y3Q8 395 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CACNA1IQ9P0X4 2223 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 B2RBV5 119 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 FOXE1O00358 373 aaPredicted RBP20.23■□□□□ 0.83
VPS28-208ENST00000527797 BTN3A3O00478 584 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 PEBP1P30086 187 aaKnown RBP20.23■□□□□ 0.83
VPS28-208ENST00000527797 HHEXQ03014 270 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 RBBP5Q15291 538 aaKnown RBP20.23■□□□□ 0.83
VPS28-208ENST00000527797 SF1Q15637 639 aaKnown RBP20.23■□□□□ 0.83
VPS28-208ENST00000527797 PDCD4Q53EL6 469 aaKnown RBP20.23■□□□□ 0.83
VPS28-208ENST00000527797 PAOXQ6QHF9 649 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 ASRGL1Q7L266 308 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 SNX32Q86XE0 403 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 PARP9Q8IXQ6 854 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 RNF175Q8N4F7 328 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 BRINP2Q9C0B6 783 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 LRMDAQ9H2I8 198 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 NT5DC2Q9H857 520 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 TMEM74BQ9NUR3 256 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.23■□□□□ 0.83
VPS28-208ENST00000527797 VPS29Q9UBQ0 182 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 PILRBQ9UKJ0 227 aa20.23■□□□□ 0.83
VPS28-208ENST00000527797 FAM221BA6H8Z2 402 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 MAGEB17A8MXT2 336 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 LMO7DNF2Z398 122 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 GPR37L1O60883 481 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 PIAS2O75928 621 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 DNAJC8O75937 253 aaPredicted RBP20.22■□□□□ 0.83
VPS28-208ENST00000527797 HRH2P25021 359 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 PIK3CBP42338 1070 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 CTSKP43235 329 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 REEP5Q00765 189 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 KIR2DS3Q14952 304 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 CACHD1Q5VU97 1274 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 TMEM26Q6ZUK4 368 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 BMP8AQ7Z5Y6 402 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 ADCK2Q7Z695 626 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 ZNF740Q8NDX6 193 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 OR2L3Q8NG85 312 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 NELL1Q92832 810 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 ZC3H10Q96K80 434 aaKnown RBP20.22■□□□□ 0.83
VPS28-208ENST00000527797 TMEM184CQ9NVA4 438 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 ASIC5Q9NY37 505 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 CCDC167Q9P0B6 97 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 ADGRE2Q9UHX3 823 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 RRP15Q9Y3B9 282 aaKnown RBP20.22■□□□□ 0.83
VPS28-208ENST00000527797 POLR3HQ9Y535 204 aaPredicted RBP20.22■□□□□ 0.83
VPS28-208ENST00000527797 SNX11Q9Y5W9 270 aa20.22■□□□□ 0.83
VPS28-208ENST00000527797 OR6C74A6NCV1 312 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 SDC3O75056 442 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 NME5P56597 212 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 MXRA7P84157 204 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 KIAA0040Q15053 153 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 RINLQ6ZS11 566 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 GK5Q6ZS86 529 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 PIGKQ92643 395 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 BTBD10Q9BSF8 475 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 NMRK1Q9NWW6 199 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 ZSCAN32Q9NX65 697 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 TMED5Q9Y3A6 229 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 CEP192Q8TEP8 1941 aa20.21■□□□□ 0.83
VPS28-208ENST00000527797 G6PDP11413 515 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 CD1EP15812 388 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 AMD1P17707 334 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 MAPK1P28482 360 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SERPINB1P30740 379 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 RPS13P62277 151 aaKnown RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 CSNK1G2P78368 415 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ZNF528Q3MIS6 628 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ADNP2Q6IQ32 1131 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 CYP20A1Q6UW02 462 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ARL14Q8N4G2 192 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 OR9I1Q8NGQ6 314 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 APIPQ96GX9 242 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 METTL2AQ96IZ6 378 aaKnown RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 RTKNQ9BST9 563 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 TWSG1Q9GZX9 223 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 TMEM45AQ9NWC5 275 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ZIM2Q9NZV7 527 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SNX7Q9UNH6 387 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ENTPD2Q9Y5L3 495 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 IGKV1-8A0A0C4DH67 115 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ANKDD1BA6NHY2 528 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 GYG2O15488 501 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SLC22A3O75751 556 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SNRPB2P08579 225 aaKnown RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 POLR2CP19387 275 aaPredicted RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 AVPR2P30518 371 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 GRK3P35626 688 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 ARRB1P49407 418 aaPredicted RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 MAZP56270 477 aaKnown RBP20.2■□□□□ 0.82
VPS28-208ENST00000527797 CORO7P57737 925 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 DEFB133Q30KQ1 61 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms