RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PDE10AQ9Y233 779 aa9.74□□□□□ -0.85
VPS28-204ENST00000526054 PCDHGA9Q9Y5G4 932 aaKnown RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 USP9XQ93008 2570 aaPredicted RBP9.74□□□□□ -0.85
VPS28-204ENST00000526054 BLACEA4D250 179 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 KRT87PA6NCN2 255 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 NPEPPSL1A6NEC2 478 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 SLC9B1P1A6NJY1 282 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ERLIN1O75477 346 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 CCNDBP1O95273 360 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 SLC16A8O95907 504 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 SLC35E2BP0CK96 405 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 TYK2P29597 1187 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 PEBP1P30086 187 aaKnown RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 RPA3P35244 121 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 SLC26A3P40879 764 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 UQCRFS1P47985 274 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 TSTA3Q13630 321 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 CSHL1Q14406 222 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 PHKG1Q16816 387 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 SBSNQ6UWP8 590 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ZNF517Q6ZMY9 492 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 C2orf73Q8N5S3 287 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 ENDOVQ8N8Q3 282 aaKnown RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 SLC38A9Q8NBW4 561 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 CPT1CQ8TCG5 803 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ZNF480Q8WV37 535 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 DCAKDQ8WVC6 231 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ANKRD49Q8WVL7 239 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ATL1Q8WXF7 558 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 DLG3Q92796 817 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 CAVIN3Q969G5 261 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 MTBPQ96DY7 904 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 CLIP3Q96DZ5 547 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 LRFN5Q96NI6 719 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 OR2A14Q96R47 310 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 DHRS4Q9BTZ2 278 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ING2Q9H160 280 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 CHST8Q9H2A9 424 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 EPB41L4BQ9H329 900 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 PPCSQ9HAB8 311 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 NMRAL1Q9HBL8 299 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 ARL15Q9NXU5 204 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 STOX2Q9P2F5 926 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 PSMC3IPQ9P2W1 217 aaPredicted RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 G3BP2Q9UN86 482 aaKnown RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 FARSAQ9Y285 508 aaKnown RBP9.73□□□□□ -0.85
VPS28-204ENST00000526054 ACOT9Q9Y305 439 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 HEATR5BQ9P2D3 2071 aa9.73□□□□□ -0.85
VPS28-204ENST00000526054 A0A096LPK6 155 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 IQANK1A0A1B0GTG1 560 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 HMX2A2RU54 273 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CCDC151A5D8V7 595 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 TMEM150CB9EJG8 249 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 TRIM49D1C9J1S8 452 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 MEN1O00255 615 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CDC7O00311 574 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 AGFG2O95081 481 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 C2P06681 752 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 SNRPAP09012 282 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 LTA4HP09960 611 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 CD1DP15813 335 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ST6GAL1P15907 406 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 GNLYP22749 145 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CCND1P24385 295 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 IMPA1P29218 277 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CMPK1P30085 196 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 HSD17B3P37058 310 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CCL11P51671 97 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 CDKL1Q00532 357 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 FASTKQ14296 549 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 TSNQ15631 228 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 SF1Q15637 639 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 NADK2Q4G0N4 442 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 THEMIS2Q5TEJ8 643 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 PRAMEF17Q5VTA0 474 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 KLC3Q6P597 504 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ADGRD1Q6QNK2 874 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 FAM198BQ6UWH4 519 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 TRIM73Q86UV7 250 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 DSELQ8IZU8 1212 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 C19orf47Q8N9M1 422 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 GALNT11Q8NCW6 608 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 FLVCR1-AS1Q8TAF5 88 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ADAMTS17Q8TE56 1095 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ISL2Q96A47 359 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 FBXL8Q96CD0 374 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 UBXN10Q96LJ8 280 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 TSNARE1Q96NA8 513 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 PSMG3-AS1Q96PY0 264 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 TRAPPC9Q96Q05 1148 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 SLC7A5P2Q9GIP4 190 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 PCBD2Q9H0N5 130 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 VPS11Q9H270 941 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ACTR5Q9H9F9 607 aaPredicted RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 CCDC177Q9NQR7 707 aaPredicted RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 UTP6Q9NYH9 597 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 OARD1Q9Y530 152 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 ICE1Q9Y2F5 2266 aa9.72□□□□□ -0.85
VPS28-204ENST00000526054 SPTBN1Q01082 2364 aaKnown RBP9.72□□□□□ -0.85
VPS28-204ENST00000526054 MED13Q9UHV7 2174 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms