RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 GGT5P36269 586 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 SLC26A3P40879 764 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 CCR10P46092 362 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 KCNC1P48547 511 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 POLE2P56282 527 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 VSX2P58304 361 aaPredicted RBP9.27□□□□□ -0.93
RNF4-221ENST00000513643 SNRPNP63162 240 aaKnown RBP9.27□□□□□ -0.93
RNF4-221ENST00000513643 NAE1Q13564 534 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 DEFB109BQ30KR1 87 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 TAF1BQ53T94 588 aaPredicted RBP9.27□□□□□ -0.93
RNF4-221ENST00000513643 CDKL4Q5MAI5 379 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 FAM69BQ5VUD6 431 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 GARNL3Q5VVW2 1013 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 CAPN12Q6ZSI9 719 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 VN1R4Q7Z5H5 301 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 ZNF592Q92610 1267 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 FKBP10Q96AY3 582 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 THAP11Q96EK4 314 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 PRAP1Q96NZ9 151 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 NDC1Q9BTX1 674 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 TSPYL1Q9H0U9 437 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 ATG10Q9H0Y0 220 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 WDR54Q9H977 334 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 L2HGDHQ9H9P8 463 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 CAB39LQ9H9S4 337 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 CCDC177Q9NQR7 707 aaPredicted RBP9.27□□□□□ -0.93
RNF4-221ENST00000513643 NINJ2Q9NZG7 142 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 POLHQ9Y253 713 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 OARD1Q9Y530 152 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 NBASA2RRP1 2371 aa9.27□□□□□ -0.93
RNF4-221ENST00000513643 PCSK5Q92824 1860 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 LCMT2O60294 686 aaKnown RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 HIST1H2AGP0C0S8 130 aaPredicted RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 SLC35E2BP0CK96 405 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 CD1DP15813 335 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 HIST1H2ADP20671 130 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 AGXTP21549 392 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 STX2P32856 288 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 SPRP35270 261 aaPredicted RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 SLC6A12P48065 614 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 PMS2P54278 862 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 RAB10P61026 200 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 DLG1Q12959 904 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 FAM53BQ14153 422 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 SSPNQ14714 243 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 C1orf189Q5VU69 101 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 PRAMEF13Q5VWM6 474 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 CAPN13Q6MZZ7 669 aaPredicted RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 PRMT9Q6P2P2 845 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 C16orf46Q6P387 395 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 TTLL10Q6ZVT0 673 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 ISCA2Q86U28 154 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 CCDC25Q86WR0 208 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 DTWD1Q8N5C7 304 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 CEP112Q8N8E3 955 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 OR2Y1Q8NGV0 311 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 ATL1Q8WXF7 558 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 N4BP2L2Q92802 583 aaPredicted RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 ISL2Q96A47 359 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 RHBDF1Q96CC6 855 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 MVB12AQ96EY5 273 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 TSPAN17Q96FV3 270 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 HIST1H2AHQ96KK5 128 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 SPSB2Q99619 263 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 HIST1H2AJQ99878 128 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 HAUS8Q9BT25 410 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 H2AFJQ9BTM1 129 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 TRIM54Q9BYV2 358 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 TXLNGYQ9BZA5 131 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 ACSS3Q9H6R3 686 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 GPAMQ9HCL2 828 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 ARL15Q9NXU5 204 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 UTP6Q9NYH9 597 aaKnown RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 RUVBL1Q9Y265 456 aaKnown RBP9.26□□□□□ -0.93
RNF4-221ENST00000513643 BAHCC1Q9P281 2608 aa9.26□□□□□ -0.93
RNF4-221ENST00000513643 MYO18BQ8IUG5 2567 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 MDC1Q14676 2089 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 TENM4Q6N022 2769 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 A0A1W2PQ72 361 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 CDC14CA4D256 554 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 C9J4A7 227 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 TXNDC9O14530 226 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 TAPBPO15533 448 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 P2RX6O15547 441 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 STMN1P16949 149 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 MAGEA12P43365 314 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 HNMTP50135 292 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 SOX8P57073 446 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 ATP6V0D1P61421 351 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 RPS15AP62244 130 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 PCDH1Q08174 1060 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 KCNAB2Q13303 367 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 E2F2Q14209 437 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 USP10Q14694 798 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 EFTUD2Q15029 972 aaKnown RBP eCLIP9.25□□□□□ -0.938e-8■■■□□ 16.7
RNF4-221ENST00000513643 TGFBIQ15582 683 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 TSNQ15631 228 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 NKG7Q16617 165 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 MUM1Q2TAK8 710 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 HKDC1Q2TB90 917 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms