RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 KIAA1522Q9P206 1035 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CAB39Q9Y376 341 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 PABPN1LA6NDY0 278 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 MAGEB17A8MXT2 336 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 HSMCR30P0CW71 290 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 GADD45AP24522 165 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CD40LGP29965 261 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 NKX2-5P52952 324 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ACLYP53396 1101 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CAMK2GQ13555 558 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 KEAP1Q14145 624 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 GPR162Q16538 588 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 FRG2Q64ET8 278 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CCSAPQ6IQ19 270 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TMEM53Q6P2H8 277 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TRAF7Q6Q0C0 670 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TPGS1Q6ZTW0 290 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ARL14EPQ8N8R7 260 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SH3KBP1Q96B97 665 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 PLD4Q96BZ4 506 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 FRG2BQ96QU4 278 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CDK5RAP1Q96SZ6 601 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 MANSC4A6NHS7 340 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 DLGAP3O95886 979 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TUFMP49411 452 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ALDH7A1P49419 539 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 DGKEP52429 567 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 PPP5CP53041 499 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 IRF8Q02556 426 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 KCNJ8Q15842 424 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 DUOXA1Q1HG43 343 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SMU1Q2TAY7 513 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ADNP2Q6IQ32 1131 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SYTL1Q8IYJ3 562 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ENTHD1Q8IYW4 607 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 P2RY13Q9BPV8 354 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ASIC5Q9NY37 505 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 RPS6KA6Q9UK32 745 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 LAMA2P24043 3122 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 H7C4K7 107 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 ACPPP15309 386 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 AMD1P17707 334 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 RRM2P31350 389 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 OR1E2P47887 323 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 CXCR4P61073 352 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 AP1S1P61966 158 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 SELENBP1Q13228 472 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 PLEKHG6Q3KR16 790 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 AGAP7PQ5VUJ5 663 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 PRSS48Q7RTY5 328 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC7A5P1Q8MH63 180 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 UTP15Q8TED0 518 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 CMTM7Q96FZ5 175 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 CEP295NLQ96MC4 621 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 CASD1Q96PB1 797 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 KLF16Q9BXK1 252 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 CWH43Q9H720 699 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 TPT1P8Q9HAU6 139 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 RRAGCQ9HB90 399 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 RAPGEFL1Q9UHV5 662 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 OR51B4Q9Y5P0 310 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 VWA8A3KMH1 1905 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 DNTTP04053 509 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 ALOX5P09917 674 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 PABPC1P11940 636 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 POU2F1P14859 743 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 IL1RNP18510 177 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 AOAHP28039 575 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 TGFBR2P37173 567 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 NSG1P42857 185 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 B4GALNT1Q00973 533 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 TXNDC8Q6A555 127 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 RETSATQ6NUM9 610 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 HS6ST3Q8IZP7 471 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 PHF10Q8WUB8 498 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 FOXJ1Q92949 421 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC38A4Q969I6 547 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC35B4Q969S0 331 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 ZIC5Q96T25 663 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 FEVQ99581 238 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 ATP11BQ9Y2G3 1177 aa8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 FAM32AQ9Y421 112 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-215ENST00000512632 OR2A25A4D2G3 310 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 HOXB9P17482 250 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 STK19P49842 368 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF404Q494X3 552 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 LRRC66Q68CR7 880 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 CRTC1Q6UUV9 634 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 EIF3MQ7L2H7 374 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 SERPINA11Q86U17 422 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 ARMC8Q8IUR7 673 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 PCSK9Q8NBP7 692 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM83FQ8NEG4 500 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 DNAJB8Q8NHS0 232 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 APH1BQ8WW43 257 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 TESCQ96BS2 214 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 RDH14Q9HBH5 336 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 SH3BP4Q9P0V3 963 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 TRBV5-4A0A0C4DH59 114 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 SCN2BO60939 215 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms