RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TNFAIP8L3	Q5GJ75	292 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	METTL2B	Q6P1Q9	378 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FBXO42	Q6P3S6	717 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RNF44	Q7L0R7	432 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	MCAT	Q8IVS2	390 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR4K1	Q8NGD4	311 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ESAM	Q96AP7	390 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZNF501	Q96CX3	271 aa	Predicted RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PRAP1	Q96NZ9	151 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CAPS2	Q9BXY5	557 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FANCE	Q9HB96	536 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ENAM	Q9NRM1	1142 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	THSD1	Q9NS62	852 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DNAJC11	Q9NVH1	559 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	MKS1	Q9NXB0	559 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CPSF2	Q9P2I0	782 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SERTAD3	Q9UJW9	196 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PILRA	Q9UKJ1	303 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RARRES3	Q9UL19	164 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SH2B3	Q9UQQ2	575 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DYRK1B	Q9Y463	629 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TNPO3	Q9Y5L0	923 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	B3GALT1	Q9Y5Z6	326 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KCNE2	Q9Y6J6	123 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TPR	P12270	2363 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CHD8	Q9HCK8	2581 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	WDFY3	Q8IZQ1	3526 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	STX16-NPEPL1	H3BU86	382 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489		K7EPI3	171 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	COPE	O14579	308 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	STX16	O14662	325 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	HCRTR1	O43613	425 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SRPX2	O60687	465 aa	Predicted RBP	11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CAPNS1	P04632	268 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CDH1	P12830	882 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	EZR	P15311	586 aa	Known RBP	11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GNAZ	P19086	355 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CD82	P27701	267 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLC5A2	P31639	672 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	AGTR2	P50052	363 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CCR8	P51685	355 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CSNK1G2	P78368	415 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CYP4F3	Q08477	520 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CDC16	Q13042	620 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PCBP2	Q15366	365 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TBC1D25	Q3MII6	688 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CCDC153	Q494R4	210 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FBXO48	Q5FWF7	155 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	C16orf46	Q6P387	395 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	LRRC70	Q7Z2Q7	622 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PPP1R3B	Q86XI6	285 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SRRM1	Q8IYB3	904 aa	Known RBP	11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	C4orf33	Q8N1A6	199 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	BANP	Q8N9N5	519 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLC5A11	Q8WWX8	675 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NEIL2	Q969S2	332 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PMEPA1	Q969W9	287 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PGM2	Q96G03	612 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZNF285	Q96NJ3	590 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CTRC	Q99895	268 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZFYVE21	Q9BQ24	234 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SARG	Q9BW04	601 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SPRY4	Q9C004	299 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PELI2	Q9HAT8	420 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GPRC5B	Q9NZH0	403 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ACSL6	Q9UKU0	697 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	EMCN	Q9ULC0	261 aa		11.41	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CROCC	Q5TZA2	2017 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FRY	Q5TBA9	3013 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM150C	B9EJG8	249 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489		H3BMH7	237 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NRP2	O60462	931 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CCNT2	O60583	730 aa	Known RBP	11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PLIN3	O60664	434 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PROC	P04070	461 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TAC1	P20366	129 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ITGA1	P56199	1179 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RPS15A	P62244	130 aa	Known RBP	11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NFKB2	Q00653	900 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PCDH1	Q08174	1060 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PDK4	Q16654	411 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DEFB110	Q30KQ9	67 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TCTE1	Q5JU00	501 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NXPE4	Q6UWF7	544 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	UNQ6494/PRO21346	Q6UXR6	183 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLCO4C1	Q6ZQN7	724 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	HDX	Q7Z353	690 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ADCK2	Q7Z695	626 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PTGR2	Q8N8N7	351 aa	Predicted RBP	11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR1L3	Q8NH93	324 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	N4BP2L2	Q92802	583 aa	Predicted RBP	11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	THAP11	Q96EK4	314 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	APOPT1	Q96IL0	206 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SMC6	Q96SB8	1091 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	EHD1	Q9H4M9	534 aa		11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CCDC86	Q9H6F5	360 aa	Known RBP	11.4	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OPTC	Q9UBM4	332 aa		11.4	□□□□□ -0.58

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