RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 BDKRB1P46663 353 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 DAPP51397 102 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 CTSCP53634 463 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 MLLT10P55197 1068 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 DCDC1P59894 354 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 IL5RAQ01344 420 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 SRSF11Q05519 484 aaKnown RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 CDK5R2Q13319 367 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 AQP6Q13520 282 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 RFX4Q33E94 735 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 HENMT1Q5T8I9 393 aaKnown RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 LAIR1Q6GTX8 287 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 OR2T5Q6IEZ7 315 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 BRAT1Q6PJG6 821 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 SLC16A12Q6ZSM3 486 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 KREMEN2Q8NCW0 462 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 PIK3C3Q8NEB9 887 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 DDHD1Q8NEL9 900 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 OR8J2Q8NGG1 315 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 OR2T29Q8NH02 315 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 CYB5D2Q8WUJ1 264 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 ABTB1Q969K4 478 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 TBC1D20Q96BZ9 403 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 C11orf24Q96F05 449 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 MED8Q96G25 268 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 MAGED4Q96JG8 741 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 CCDC138Q96M89 665 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 TOX2Q96NM4 488 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 FUNDC2Q9BWH2 189 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 RIBC2Q9H4K1 309 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 MTG2Q9H4K7 406 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 GPN2Q9H9Y4 310 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 STOX2Q9P2F5 926 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-204ENST00000501271 ATP11BQ9Y2G3 1177 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 GMEB1Q9Y692 573 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 LRRK1Q38SD2 2015 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 KIAA1549LQ6ZVL6 1849 aa9.54□□□□□ -0.88
CLIP1-204ENST00000501271 NOTCH4Q99466 2003 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 A0A1W2PQ67 120 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TTC34A8MYJ7 566 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 PRMT3O60678 531 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 INMTO95050 263 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CTSLP07711 333 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TFPTP0C1Z6 253 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CYP2A6P11509 494 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 HOXB6P17509 224 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 NR4A1P22736 598 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ITGB8P26012 769 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 PPM1AP35813 382 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CLK3P49761 638 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 GP2P55259 537 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 PRMT2P55345 433 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 RAE1P78406 368 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 IL1RL1Q01638 556 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CREMQ03060 361 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TOP3AQ13472 1001 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 IL18R1Q13478 541 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 NAE1Q13564 534 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 SIM2Q14190 667 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 POM121L1PQ3SYA9 428 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ARSIQ5FYB1 569 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 DUS1LQ6P1R4 473 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 AGTRAPQ6RW13 159 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CCDC149Q6ZUS6 474 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 PGBD3Q8N328 593 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ELMOD1Q8N336 334 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 RASGEF1AQ8N9B8 481 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 POP5Q969H6 163 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 SH3KBP1Q96B97 665 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 HSH2DQ96JZ2 352 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 MAGEB10Q96LZ2 347 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 NODALQ96S42 347 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 YME1L1Q96TA2 773 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 MYOCQ99972 504 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 LINC00597Q9H2U6 94 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TRIT1Q9H3H1 467 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TM9SF3Q9HD45 589 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TMEM39AQ9NV64 488 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 FAM120CQ9NX05 1096 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 WARS2Q9UGM6 360 aaKnown RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 PSME2Q9UL46 239 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 AP2A2O94973 939 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 BCL10O95999 233 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 FABP3P05413 133 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 NUDT7P0C024 238 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TIMP2P16035 220 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 FSHRP23945 695 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 FMO3P31513 532 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 KDELR2P33947 212 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 RECQLP46063 649 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 BMXP51813 675 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 CRYBA2P53672 197 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ACSM2AQ08AH3 577 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 KCNC3Q14003 757 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 SPCS2Q15005 226 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 TEAD2Q15562 447 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF829Q3KNS6 432 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-204ENST00000501271 SYTL3Q4VX76 610 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 ACSM2BQ68CK6 577 aa9.53□□□□□ -0.88
CLIP1-204ENST00000501271 KDM4DQ6B0I6 523 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms