RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ITPR3Q14573 2671 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 IGHV3-20A0A0C4DH32 117 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 GRID2IPA4D2P6 1211 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ERI2A8K979 691 aaKnown RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 FAM227AF5H4B4 570 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 P2RX6O15547 441 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 VPS26AO75436 327 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 SEC24DO94855 1032 aaPredicted RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 CLDN14O95500 239 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 C8orf89P0DMQ9 161 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ERGP11308 486 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ICAM2P13598 275 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 CCNFP41002 786 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 TTPAP49638 278 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ST13P50502 369 aaKnown RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 SMSP52788 366 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 AP2B1P63010 937 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 MAT1AQ00266 395 aaKnown RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 NAA25Q14CX7 972 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 LONRF1Q17RB8 773 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 FCRLBQ6BAA4 426 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 LANCL3Q6ZV70 420 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 OTOAQ7RTW8 1153 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 PAQR7Q86WK9 346 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 CCDC170Q8IYT3 715 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 BEST3Q8N1M1 668 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ATG4AQ8WYN0 398 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 SIGLEC12Q96PQ1 595 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 OR2A5Q96R48 311 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 HES7Q9BYE0 225 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 DRC3Q9H069 523 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 MRPS30Q9NP92 439 aaKnown RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 GNPTGQ9UJJ9 305 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ANAPC5Q9UJX4 755 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 PACSIN2Q9UNF0 486 aaPredicted RBP13.92□□□□□ -0.18
TRAF4-212ENST00000498540 ZNF835Q9Y2P0 537 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 MRFAP1Q9Y605 127 aa13.92□□□□□ -0.18
TRAF4-212ENST00000498540 A8MUI8 341 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 CD3EAPO15446 510 aaKnown RBP13.91□□□□□ -0.18
TRAF4-212ENST00000498540 PHF2O75151 1096 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 MYBL2P10244 700 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 CYLC1P35663 651 aaPredicted RBP13.91□□□□□ -0.18
TRAF4-212ENST00000498540 EIF3BP55884 814 aaKnown RBP13.91□□□□□ -0.18
TRAF4-212ENST00000498540 CTSL3PQ5NE16 218 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 GARNL3Q5VVW2 1013 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 SPNS3Q6ZMD2 512 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 Q6ZPB1 254 aaPredicted RBP13.91□□□□□ -0.18
TRAF4-212ENST00000498540 PRUNE1Q86TP1 453 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 CDH24Q86UP0 819 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 SPPL2CQ8IUH8 684 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 MDS2Q8NDY4 140 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 THAP3Q8WTV1 239 aaPredicted RBP13.91□□□□□ -0.18
TRAF4-212ENST00000498540 MRFAP1L1Q96HT8 127 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 GPR137Q96N19 417 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 FOPNLQ96NB1 174 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 VN1R1Q9GZP7 353 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 LACRTQ9GZZ8 138 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 KLHL1Q9NR64 748 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 CHRAC1Q9NRG0 131 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 TEKT2Q9UIF3 430 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 MEMO1Q9Y316 297 aa13.91□□□□□ -0.18
TRAF4-212ENST00000498540 GTF3C1Q12789 2109 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 SOWAHDA6NJG2 315 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 ARHGEF33A8MVX0 844 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 KPNA5O15131 536 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 ZNHIT1O43257 154 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 MATN4O95460 622 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 STATHP02808 62 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 RPS3P23396 243 aaKnown RBP eCLIP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 RPA3P35244 121 aaPredicted RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 TSTA3Q13630 321 aaPredicted RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 TUBA3CQ13748 450 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 GBX1Q14549 363 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 BTBD16Q32M84 506 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 ACER2Q5QJU3 275 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 ZNF425Q6IV72 752 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 TUBA3EQ6PEY2 450 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 CEP97Q8IW35 865 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 RNF214Q8ND24 703 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 PPHLN1Q8NEY8 458 aaKnown RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 OR9A1PQ8NGU1 263 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 MAGEC3Q8TD91 643 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 SMPDL3AQ92484 453 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 PEX13Q92968 403 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 RERGQ96A58 199 aaPredicted RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 FAM136AQ96C01 138 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 C14orf79Q96F83 325 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 CALR3Q96L12 384 aaKnown RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 NPAS2Q99743 824 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 ANKRD10Q9NXR5 420 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 TAC3Q9UHF0 121 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 PCYOX1Q9UHG3 505 aa13.9□□□□□ -0.18
TRAF4-212ENST00000498540 REXO2Q9Y3B8 237 aaKnown RBP13.9□□□□□ -0.18
TRAF4-212ENST00000498540 OR2W5A6NFC9 320 aa13.89□□□□□ -0.19
TRAF4-212ENST00000498540 BTNL10A8MVZ5 291 aa13.89□□□□□ -0.19
TRAF4-212ENST00000498540 E7EVH7 732 aa13.89□□□□□ -0.19
TRAF4-212ENST00000498540 NPIPA5E9PKD4 350 aa13.89□□□□□ -0.19
TRAF4-212ENST00000498540 TTI1O43156 1089 aa13.89□□□□□ -0.19
TRAF4-212ENST00000498540 MAN1A2O60476 641 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms