RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CTF1Q16619 201 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF697Q5TEC3 545 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 TTC23Q5W5X9 447 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF551Q7Z340 670 aaPredicted RBP16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 UBTD2Q8WUN7 234 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 UGT2B28Q9BY64 529 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 ZBP1Q9H171 429 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 ASAH2Q9NR71 780 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 HS3ST2Q9Y278 367 aa16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 CAB39Q9Y376 341 aaPredicted RBP16.02■□□□□ 0.15
CCDC88B-210ENST00000494566 A6NL46 340 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CLDN25C9JDP6 229 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 H0YAE9 185 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MT-ND2P03891 347 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 NTRK1P04629 796 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 HIST1H2AGP0C0S8 130 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 BMP4P12644 408 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ATP1B2P14415 290 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF12P17014 697 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 HIST1H2ADP20671 130 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 IGFBP5P24593 272 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 PBLDP30039 288 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MVKQ03426 396 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 SPATS1Q496A3 300 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZCCHC8Q6NZY4 707 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 DCP2Q8IU60 420 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZCCHC7Q8N3Z6 543 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 OR2A12Q8NGT7 310 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CHPT1Q8WUD6 406 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 RORBQ92753 470 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 HIST1H2AHQ96KK5 128 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 LYSMD1Q96S90 227 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 HIST1H2AJQ99878 128 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 H2AFJQ9BTM1 129 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ROGDIQ9GZN7 287 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 RDH14Q9HBH5 336 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 SERHLQ9NQF3 203 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF639Q9UID6 485 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ITM2BQ9Y287 266 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 WNT6Q9Y6F9 365 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 NOTCH4Q99466 2003 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 DYTNA2CJ06 578 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 LEFTY1O75610 366 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 VIPP01282 170 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 IL6P05231 212 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 TYRP14679 529 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 S100A3P33764 101 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ERVFC1P60507 584 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ISL1P61371 349 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 PPP2R2BQ00005 443 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CDK5R2Q13319 367 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 TP53BP2Q13625 1128 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 INAVAQ3KP66 663 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 RUNDC3AQ59EK9 446 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ARSIQ5FYB1 569 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 PLPP4Q5VZY2 271 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ANGPTL8Q6UXH0 198 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 SLC22A16Q86VW1 577 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 TRUB1Q8WWH5 349 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ASB11Q8WXH4 323 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 TBCCD1Q9NVR7 557 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 TSC22D4Q9Y3Q8 395 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CCDC88CQ9P219 2028 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 LOC100506127A0A0U1RQW1 187 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 LINC00854A0A1B0GVQ3 168 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 C16orf96A6NNT2 1141 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF701M0R085 212 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 PABPC1P11940 636 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 GSTM2P28161 218 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CHIT1Q13231 466 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MAD2L1Q13257 205 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 LY6G5CQ5SRR4 150 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MPP7Q5T2T1 576 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 CYP2U1Q7Z449 544 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 SPRED2Q7Z698 418 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZDHHC21Q8IVQ6 265 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 OR52J3Q8NH60 311 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 FAR1Q8WVX9 515 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MED8Q96G25 268 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 MCCC1Q96RQ3 725 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 C6orf62Q9GZU0 229 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 KAT8Q9H7Z6 458 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 PMF1-BGLAPU3KQ54 211 aa16.01■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF99A8MXY4 864 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 RECQL5O94762 991 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 POP4O95707 220 aaKnown RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 CD22P20273 847 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 GSTM4Q03013 218 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 TSTA3Q13630 321 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 GDPD4Q6W3E5 623 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 B3GNT8Q7Z7M8 397 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 ATG16L2Q8NAA4 619 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 ING5Q8WYH8 240 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 RIOK2Q9BVS4 552 aaKnown RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 SLC12A9Q9BXP2 914 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEFF2Q9UIK5 374 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 ORC6Q9Y5N6 252 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 KCNE1BA0A087WTH5 132 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 FADS2P1A8MWK0 482 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 GRM6O15303 877 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms