RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ST13P50502 369 aaKnown RBP13.22□□□□□ -0.29
VARS-227ENST00000489979 RWDD2BP57060 319 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 CSNK1G2P78368 415 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 MAT1AQ00266 395 aaKnown RBP13.22□□□□□ -0.29
VARS-227ENST00000489979 ALDH6A1Q02252 535 aaKnown RBP13.22□□□□□ -0.29
VARS-227ENST00000489979 ACVR1Q04771 509 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 CDH17Q12864 832 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 NAA25Q14CX7 972 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 PTRHD1Q6GMV3 140 aaKnown RBP13.22□□□□□ -0.29
VARS-227ENST00000489979 CNGA4Q8IV77 575 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 BEST3Q8N1M1 668 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 POM121Q96HA1 1249 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 SIGLEC12Q96PQ1 595 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 PLCD4Q9BRC7 762 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 MRPS30Q9NP92 439 aaKnown RBP13.22□□□□□ -0.29
VARS-227ENST00000489979 KLHL1Q9NR64 748 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 SPATA7Q9P0W8 599 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 RIMKLBQ9ULI2 386 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 NPIPA1Q9UND3 350 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 PCDHGB6Q9Y5F9 930 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 MRFAP1Q9Y605 127 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 SPG11Q96JI7 2443 aa13.22□□□□□ -0.29
VARS-227ENST00000489979 AKR1B15C9JRZ8 316 aaPredicted RBP13.21□□□□□ -0.29
VARS-227ENST00000489979 MLYCDO95822 493 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 GAS8O95995 478 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ADRA1DP25100 572 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 CCNFP41002 786 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 PRAMEP78395 509 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 TUBA3CQ13748 450 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 BTBD16Q32M84 506 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 AARS2Q5JTZ9 985 aaKnown RBP13.21□□□□□ -0.29
VARS-227ENST00000489979 ACER2Q5QJU3 275 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 GARNL3Q5VVW2 1013 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 TUBA3EQ6PEY2 450 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 MEX3BQ6ZN04 569 aaKnown RBP13.21□□□□□ -0.29
VARS-227ENST00000489979 OTOAQ7RTW8 1153 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 PAQR7Q86WK9 346 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ARHGEF39Q8N4T4 335 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ACBD4Q8NC06 268 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 MDS2Q8NDY4 140 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 MAGEC3Q8TD91 643 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 METTL21AQ8WXB1 218 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ALG3Q92685 438 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ZNF354BQ96LW1 612 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 FOPNLQ96NB1 174 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 PANX3Q96QZ0 392 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 TMEM121Q9BTD3 319 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 DRC3Q9H069 523 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ENKD1Q9H0I2 346 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 ANKRD10Q9NXR5 420 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 MARCH4Q9P2E8 410 aaPredicted RBP13.21□□□□□ -0.29
VARS-227ENST00000489979 TSR3Q9UJK0 312 aaKnown RBP13.21□□□□□ -0.29
VARS-227ENST00000489979 ANAPC5Q9UJX4 755 aa13.21□□□□□ -0.29
VARS-227ENST00000489979 IGKV1-8A0A0C4DH67 115 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 ASPDHA6ND91 283 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 GOLGA6L9A6NEM1 432 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 PHF2O75151 1096 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 PTMAP06454 111 aaKnown RBP13.2□□□□□ -0.3
VARS-227ENST00000489979 ABOP16442 354 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 EEF1DP29692 281 aaKnown RBP13.2□□□□□ -0.3
VARS-227ENST00000489979 CD96P40200 585 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 GRIA1P42261 906 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 OR1C1Q15619 314 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 PLAG1Q6DJT9 500 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 SPINK14Q6IE38 97 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 H3F3CQ6NXT2 135 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 SUSD1Q6UWL2 747 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 PPP1R21Q6ZMI0 780 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 LANCL3Q6ZV70 420 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 CPEB2Q7Z5Q1 589 aaKnown RBP13.2□□□□□ -0.3
VARS-227ENST00000489979 SIAH3Q8IW03 269 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 AGAP11Q8TF27 550 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 RERGQ96A58 199 aaPredicted RBP13.2□□□□□ -0.3
VARS-227ENST00000489979 SCMH1Q96GD3 660 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 MRFAP1L1Q96HT8 127 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 OR2A5Q96R48 311 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 VN1R1Q9GZP7 353 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 P2RY12Q9H244 342 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 KCNK13Q9HB14 408 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 CATSPERZQ9NTU4 200 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 GNPTGQ9UJJ9 305 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 TCAF1Q9Y4C2 921 aa13.2□□□□□ -0.3
VARS-227ENST00000489979 SCN3AQ9NY46 2000 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 ERI2A8K979 691 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 KPNA5O15131 536 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 P2RX6O15547 441 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 ASNA1O43681 348 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 CD46P15529 392 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 RPA3P35244 121 aaPredicted RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 TTPAP49638 278 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 NAP1L1P55209 391 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 SNRPNP63162 240 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 HSF1Q00613 529 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 TSTA3Q13630 321 aaPredicted RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 SPA17Q15506 151 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 MINDY4Q4G0A6 757 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 MFSD4BQ5TF39 518 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 ZNF425Q6IV72 752 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 C3P1Q6ZMU1 363 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms