RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 DPEP2Q9H4A9 486 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ACTL8Q9H568 366 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF696Q9H7X3 374 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SPAG4Q9NPE6 437 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 MAP10Q9P2G4 905 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SUCOQ9UBS9 1254 aaKnown RBP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 CROTQ9UKG9 612 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SIT1Q9Y3P8 196 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SLCO1B1Q9Y6L6 691 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ASPDHA6ND91 283 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 BBIP1A8MTZ0 92 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 TMX2-CTNND1H3BSU7 103 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ANKRD28O15084 1053 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ULK1O75385 1050 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 PDYNP01213 254 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 CD22P20273 847 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 OXTRP30559 389 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 CCR3P51677 355 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 RHDQ02161 417 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 RPS6KA2Q15349 733 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 CPSF6Q16630 551 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 TPRG1LQ5T0D9 272 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ARHGAP22Q7Z5H3 698 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 RGL4Q8IZJ4 473 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 BMFQ96LC9 184 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SOX17Q9H6I2 414 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ZIM2Q9NZV7 527 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 CD300AQ9UGN4 299 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ABCA7Q8IZY2 2146 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 LRRC72A6NJI9 287 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 RGS14O43566 566 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 KRT6AP02538 564 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 KRT6BP04259 564 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 IGHV4-34P06331 123 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 MTHFD1P11586 935 aaKnown RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 NCK1P16333 377 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 KRT6CP48668 564 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 PLOD1Q02809 727 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 PCDH1Q08174 1060 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 RCAN2Q14206 197 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 SMU1Q2TAY7 513 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 B3GNT6Q6ZMB0 384 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 LRRTM4Q86VH4 590 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 PROKR1Q8TCW9 393 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF480Q8WV37 535 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 APOOQ9BUR5 198 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 ACPTQ9BZG2 426 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 WSB2Q9NYS7 404 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 MOSPD1Q9UJG1 213 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 NDUFAF1Q9Y375 327 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 PLEKHM1Q9Y4G2 1056 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 POLR3HQ9Y535 204 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 SPEGQ15772 3267 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 SLC22A3O75751 556 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 G6PDP11413 515 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CASP2P42575 452 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CHIT1Q13231 466 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CYP20A1Q6UW02 462 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 PDZD3Q86UT5 571 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 AMZ2Q86W34 360 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CATSPER1Q8NEC5 780 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 TSPAN14Q8NG11 270 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 TSPEARQ8WU66 669 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 VPS33AQ96AX1 596 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CLDN23Q96B33 292 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 BIRC7Q96CA5 298 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 MTFMTQ96DP5 389 aaKnown RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 GPATCH1Q9BRR8 931 aaKnown RBP11.75□□□□□ -0.53
HDAC6-230ENST00000488543 CHRDQ9H2X0 955 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 SGK2Q9HBY8 427 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 TMEM45AQ9NWC5 275 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 TMEM181Q9P2C4 612 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 ZDBF2Q9HCK1 2354 aa11.75□□□□□ -0.53
HDAC6-230ENST00000488543 NUP214P35658 2090 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 TCRBV3S1A0A5B6 114 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SERTM1A2A2V5 107 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 ANKRD33BA6NCL7 494 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 E7EQ34 232 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 FXYD1O00168 92 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 RSL1D1O76021 490 aaKnown RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 CEACAM5P06731 702 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SLC2A4P14672 509 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 JUPP14923 745 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 HALP42357 657 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 RANBP1P43487 201 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 RPL38P63173 70 aaKnown RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 RPA4Q13156 261 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 COQ5Q5HYK3 327 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 CHST15Q7LFX5 561 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 TRIM69Q86WT6 500 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 ZFAND4Q86XD8 727 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 DHFR2Q86XF0 187 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 EPHX4Q8IUS5 362 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 LRRC56Q8IYG6 542 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SPEM1Q8N4L4 309 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 LMNTD1Q8N9Z9 388 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 FAM47BQ8NA70 645 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 OR9A1PQ8NGU1 263 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 MED8Q96G25 268 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 LRTM1Q9HBL6 345 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms