RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CCDC68Q9H2F9 335 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 ZNF304Q9HCX3 659 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 C5AR2Q9P296 337 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 CDC23Q9UJX2 597 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PDE10AQ9Y233 779 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 TEX264Q9Y6I9 313 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 EIF3FO00303 357 aaPredicted RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 VPS26AO75436 327 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 ZGLP1P0C6A0 271 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PIM1P11309 404 aaPredicted RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 EZRP15311 586 aaKnown RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 ELK3P41970 407 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 RELAQ04206 551 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PHKG1Q16816 387 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 VWA2Q5GFL6 755 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 TEDDM1Q5T9Z0 273 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 STEAP4Q687X5 459 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 HIBCHQ6NVY1 386 aaPredicted RBP13.43□□□□□ -0.26
UPF3A-204ENST00000475218 HPS6Q86YV9 775 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 KLHL7Q8IXQ5 586 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 PRSS58Q8IYP2 241 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 C19orf60Q96EN9 201 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 CERS2Q96G23 380 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 ATP13A2Q9NQ11 1180 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 ABCF3Q9NUQ8 709 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 IKZF3Q9UKT9 509 aa13.43□□□□□ -0.26
UPF3A-204ENST00000475218 H7BY64 318 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 ZBTB14O43829 449 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 TTC4O95801 387 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 STATHP02808 62 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 CARSP49589 748 aaKnown RBP13.42□□□□□ -0.26
UPF3A-204ENST00000475218 TBPL1P62380 186 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 AIMP2Q13155 320 aaKnown RBP13.42□□□□□ -0.26
UPF3A-204ENST00000475218 NAA25Q14CX7 972 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 MUM1Q2TAK8 710 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 PRAMEF13Q5VWM6 474 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 ATG9BQ674R7 924 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 PRMT9Q6P2P2 845 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 VN1R4Q7Z5H5 301 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 GALNT11Q8NCW6 608 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 PRAP1Q96NZ9 151 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 OLFM1Q99784 485 aa13.42□□□□□ -0.26
UPF3A-204ENST00000475218 NXT1Q9UKK6 140 aaKnown RBP13.42□□□□□ -0.26
UPF3A-204ENST00000475218 RP1L1Q8IWN7 2480 aaPredicted RBP13.42□□□□□ -0.26
UPF3A-204ENST00000475218 TTI1O43156 1089 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 IGHEP01854 428 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 SLC26A3P40879 764 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 GNG11P61952 73 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 ABATP80404 500 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 DSG2Q14126 1118 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 FASTKD3Q14CZ7 662 aaKnown RBP13.41□□□□□ -0.26
UPF3A-204ENST00000475218 MORF4L2Q15014 288 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 PCGF5Q86SE9 256 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 GALNT7Q86SF2 657 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 COL26A1Q96A83 441 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 C8orf44Q96CB5 159 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 CABS1Q96KC9 395 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 CRB3Q9BUF7 120 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 SEMA3GQ9NS98 782 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 ZNF282Q9UDV7 671 aaPredicted RBP13.41□□□□□ -0.26
UPF3A-204ENST00000475218 TRMT6Q9UJA5 497 aaKnown RBP13.41□□□□□ -0.26
UPF3A-204ENST00000475218 CHMP2BQ9UQN3 213 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 B3GNT3Q9Y2A9 372 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 NTNG1Q9Y2I2 539 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 PSAT1Q9Y617 370 aa13.41□□□□□ -0.26
UPF3A-204ENST00000475218 ZNF839A8K0R7 811 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 TCP11X1B4DZS4 312 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SEC31AO94979 1220 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CCNDBP1O95273 360 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 RNF224P0DH78 156 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 FBLP22087 321 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 ITGA8P53708 1063 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 DR1Q01658 176 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SYT16Q17RD7 645 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 IGFL2Q6UWQ7 119 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 TMEM207Q6UWW9 146 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 Q6ZS92 163 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 KIAA0408Q6ZU52 694 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 PRSS41Q7RTY9 318 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CUZD1Q86UP6 607 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 ATCAYQ86WG3 371 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 FAM26EQ8N5C1 309 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SNRNP40Q96DI7 357 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 LINGO1Q96FE5 620 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 MACROD1Q9BQ69 325 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 NAT9Q9BTE0 207 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SGPP1Q9BX95 441 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 TAS2R13Q9NYV9 303 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 G3BP2Q9UN86 482 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SPTAN1Q13813 2472 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 A0A0A6YYC8 382 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 A0A1W2PQ72 361 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 I3L1I5 382 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 FDXRP22570 491 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CSNK1G2P78368 415 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 MRPL49Q13405 166 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 RBBP7Q16576 425 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 TUBB8Q3ZCM7 444 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 GARNL3Q5VVW2 1013 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 AGTRAPQ6RW13 159 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms