RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ACOX1Q15067 660 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 ARHGAP15Q53QZ3 475 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF805Q5CZA5 627 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 RBM48Q5RL73 367 aaKnown RBP8.65□□□□□ -1.02
SYNE1-217ENST00000466159 CPZQ66K79 652 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 ACSM2BQ68CK6 577 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM220Q6QAJ8 160 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 LIPIQ6XZB0 460 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 CEP68Q76N32 757 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 VTCN1Q7Z7D3 282 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 GALNT5Q7Z7M9 940 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 ZZZ3Q8IYH5 903 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 ARL10Q8N8L6 244 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 MRPL43Q8N983 215 aaKnown RBP8.65□□□□□ -1.02
SYNE1-217ENST00000466159 OR13F1Q8NGS4 319 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 HDAC2Q92769 488 aaKnown RBP8.65□□□□□ -1.02
SYNE1-217ENST00000466159 SH3KBP1Q96B97 665 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 TIFAQ96CG3 184 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 AP2M1Q96CW1 435 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 C11orf24Q96F05 449 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-217ENST00000466159 CCDC138Q96M89 665 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 WRAP53Q9BUR4 548 aaKnown RBP8.65□□□□□ -1.02
SYNE1-217ENST00000466159 LHPPQ9H008 270 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 C3orf18Q9UK00 162 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 COQ6Q9Y2Z9 468 aa8.65□□□□□ -1.02
SYNE1-217ENST00000466159 SLC5A10A0PJK1 596 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 TSPAN11A1L157 253 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 GABRR3A8MPY1 467 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 hCG_2039718K7EN88 272 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 ATG13O75143 517 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 EPN2O95208 641 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 ELFN1P0C7U0 828 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 GPX2P18283 190 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 DDX6P26196 483 aaKnown RBP eCLIP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 MAGEA2P43356 314 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 ENTPD1P49961 510 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 ISL1P61371 349 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 RAE1P78406 368 aaKnown RBP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 VMACQ2NL98 169 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 DPY19L1Q2PZI1 675 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 DHRS4L2Q6PKH6 230 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 MSANTD1Q6ZTZ1 278 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 FKBP9P1Q75LS8 142 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 DPPA4Q7L190 304 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 TRIM74Q86UV6 250 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 CYP4Z1Q86W10 505 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 PTOV1Q86YD1 416 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 SPARTQ8N0X7 666 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 C1orf52Q8N6N3 182 aaKnown RBP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 BPIFB6Q8NFQ5 453 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 OR8J2Q8NGG1 315 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 SNX19Q92543 992 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 MAGEB10Q96LZ2 347 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 SAMD11Q96NU1 681 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 LRRC3BQ96PB8 259 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 TUBA1CQ9BQE3 449 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 CCM2Q9BSQ5 444 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 TBC1D14Q9P2M4 693 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 GULP1Q9UBP9 304 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 CDH7Q9ULB5 785 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 SAMD4AQ9UPU9 718 aaKnown RBP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 RUVBL1Q9Y265 456 aaKnown RBP8.65□□□□□ -1.03
SYNE1-217ENST00000466159 PCM1Q15154 2024 aa8.65□□□□□ -1.03
SYNE1-217ENST00000466159 hCG_2014768A0A024R1R8 64 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 MYO1GB0I1T2 1018 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 H0YIV9 168 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 SEC14L2O76054 403 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 CATP04040 527 aaKnown RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 NUDT7P0C024 238 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 JUNBP17275 347 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 KDELR2P33947 212 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 MMP12P39900 470 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 PRLHRP49683 370 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GALK1P51570 392 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 VLDLRP98155 873 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 IL1RL1Q01638 556 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 MESP2Q0VG99 397 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 SKIV2LQ15477 1246 aaKnown RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 HKDC1Q2TB90 917 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 LDLRAP1Q5SW96 308 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GRHL2Q6ISB3 625 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 SHQ1Q6PI26 577 aaKnown RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 PARS2Q7L3T8 475 aaKnown RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GRASPQ7Z6J2 395 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 HIPK1Q86Z02 1210 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 GPR156Q8NFN8 814 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 OR7G3Q8NG95 312 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 B4GALNT2Q8NHY0 566 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 HUS1BQ8NHY5 278 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 NEIL2Q969S2 332 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 FAM83CQ9BQN1 747 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 DUSP26Q9BV47 211 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 IL1RAPQ9NPH3 570 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 SAGE1Q9NXZ1 904 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 AASSQ9UDR5 926 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 IRAK3Q9Y616 596 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 LRRK1Q38SD2 2015 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 PTGES3LE9PB15 166 aa8.64□□□□□ -1.03
SYNE1-217ENST00000466159 KPNA3O00505 521 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-217ENST00000466159 PRMT3O60678 531 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms