RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MEI1Q5TIA1 1274 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ARMC3Q5W041 872 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ZNF324BQ6AW86 544 aaPredicted RBP12.63□□□□□ -0.39
HMGB3-204ENST00000448905 SUSD1Q6UWL2 747 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ADCK2Q7Z695 626 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 MCEMP1Q8IX19 187 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 BIRC8Q96P09 236 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 KIFC1Q9BW19 673 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 RNF32Q9H0A6 362 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ZNF700Q9H0M5 742 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 HOMER3Q9NSC5 361 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 RUVBL2Q9Y230 463 aaKnown RBP12.63□□□□□ -0.39
HMGB3-204ENST00000448905 RUVBL1Q9Y265 456 aaKnown RBP12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ZKSCAN5Q9Y2L8 839 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 CRYL1Q9Y2S2 319 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 MYO9AB2RTY4 2548 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 MDC1Q14676 2089 aaKnown RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 LOC102723996A0A087X1L8 192 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 A0A0A6YYC8 382 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 OR5H15A6NDH6 313 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 A8MUI8 341 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 I3L1I5 382 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 MYO1CO00159 1063 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 PRAMEF2O60811 474 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 PSIP1O75475 530 aaKnown RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 MED26O95402 600 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 WDPCPO95876 746 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 ZSCAN5DPP0CG00 497 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 C8orf89P0DMQ9 161 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 EEF1A2Q05639 463 aaKnown RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 KLHL38Q2WGJ6 581 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 ICE2Q659A1 982 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 DRICH1Q6PGQ1 229 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 RPTNQ6XPR3 784 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 MRGPRGQ86SM5 289 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 PRUNE1Q86TP1 453 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 PAQR7Q86WK9 346 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 DTWD1Q8N5C7 304 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 ZNF354BQ96LW1 612 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 C10orf90Q96M02 699 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 OR2A5Q96R48 311 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 TAAR6Q96RI8 345 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 UNKQ9C0B0 810 aaKnown RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 CCDC68Q9H2F9 335 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 KLHL42Q9P2K6 505 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 C19orf25Q9UFG5 118 aaPredicted RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 TSR3Q9UJK0 312 aaKnown RBP12.62□□□□□ -0.39
HMGB3-204ENST00000448905 ITPR2Q14571 2701 aa12.62□□□□□ -0.39
HMGB3-204ENST00000448905 H0YIG0 161 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 SYF2O95926 243 aaKnown RBP12.61□□□□□ -0.39
HMGB3-204ENST00000448905 CYC1P08574 325 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 ERGP11308 486 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 ESRRAP11474 423 aaPredicted RBP12.61□□□□□ -0.39
HMGB3-204ENST00000448905 ZNF33BQ06732 778 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 HKDC1Q2TB90 917 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 CTSL3PQ5NE16 218 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 MFSD4BQ5TF39 518 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 HIBCHQ6NVY1 386 aaPredicted RBP12.61□□□□□ -0.39
HMGB3-204ENST00000448905 NEPROQ6NW34 567 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 XKRXQ6PP77 449 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 TMEM205Q6UW68 189 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 NEK10Q6ZWH5 1172 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 ZNF808Q8N4W9 903 aaPredicted RBP12.61□□□□□ -0.39
HMGB3-204ENST00000448905 LPGAT1Q92604 370 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 FAM136AQ96C01 138 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 MFSD3Q96ES6 412 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 CYTH2Q99418 400 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 PKP4Q99569 1192 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 MESP1Q9BRJ9 268 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 DESI2Q9BSY9 194 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 ABCF3Q9NUQ8 709 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 INTS10Q9NVR2 710 aaKnown RBP12.61□□□□□ -0.39
HMGB3-204ENST00000448905 SAMD15Q9P1V8 674 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 TAC3Q9UHF0 121 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 GUCA1BQ9UMX6 200 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 HIVEP3Q5T1R4 2406 aa12.61□□□□□ -0.39
HMGB3-204ENST00000448905 CTAGE9A4FU28 777 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 ARHGEF33A8MVX0 844 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 GOLGA6L6A8MZA4 724 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 SMAPO00193 183 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 TTI1O43156 1089 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 NIPSNAP2O75323 286 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 F10P00742 488 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 COX6B1P14854 86 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 OGNP20774 298 aaKnown RBP12.6□□□□□ -0.39
HMGB3-204ENST00000448905 MGAT1P26572 445 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 PTGER4P35408 488 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 TDGF1P3P51864 188 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 SMSP52788 366 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 YBX1P67809 324 aaKnown RBP12.6□□□□□ -0.39
HMGB3-204ENST00000448905 THOC5Q13769 683 aaKnown RBP12.6□□□□□ -0.39
HMGB3-204ENST00000448905 PTK6Q13882 451 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 GBX1Q14549 363 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 ZXDCQ2QGD7 858 aaPredicted RBP12.6□□□□□ -0.39
HMGB3-204ENST00000448905 TYSND1Q2T9J0 566 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 KRTCAP3Q53RY4 240 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 ACSBG2Q5FVE4 666 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 CASC4Q6P4E1 433 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 CES3Q6UWW8 571 aa12.6□□□□□ -0.39
HMGB3-204ENST00000448905 CPEB2Q7Z5Q1 589 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms