RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PRAP1Q96NZ9 151 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 SLC29A3Q9BZD2 475 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 GSTO2Q9H4Y5 243 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 SPHK1Q9NYA1 384 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 VTI1BQ9UEU0 232 aa9.72□□□□□ -0.85
CD44-207ENST00000425428 RIF1Q5UIP0 2472 aaKnown RBP9.72□□□□□ -0.85
CD44-207ENST00000425428 PCNX2A6NKB5 2137 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 LRRC14BA6NHZ5 514 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TRPC5OSA6NMA1 111 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 A8MU76 341 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 AZIN1O14977 448 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 OR1F1O43749 312 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 ULK1O75385 1050 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 CEACAM1P13688 526 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 JUPP14923 745 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TSPAN8P19075 237 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 PSMB5P28074 263 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 CASP2P42575 452 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 ACADVLP49748 655 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 SKP1P63208 163 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 GNGT1P63211 74 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 HSD11B2P80365 405 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 ZNF33BQ06732 778 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TGM3Q08188 693 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 DOC2AQ14183 400 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 SLBPQ14493 270 aaKnown RBP eCLIP9.71□□□□□ -0.85
CD44-207ENST00000425428 CPSF6Q16630 551 aaKnown RBP eCLIP9.71□□□□□ -0.85
CD44-207ENST00000425428 IMPG1Q17R60 797 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 GGTA1PQ4G0N0 100 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TMIGD1Q6UXZ0 262 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 RGS9BPQ6ZS82 235 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 GLRX5Q86SX6 157 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 C19orf47Q8N9M1 422 aaKnown RBP9.71□□□□□ -0.85
CD44-207ENST00000425428 DEFB124Q8NES8 71 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TRPV3Q8NET8 790 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 ABHD11Q8NFV4 315 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 OR4F6Q8NGB9 312 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 NSUN5Q96P11 429 aaKnown RBP9.71□□□□□ -0.85
CD44-207ENST00000425428 DEPDC7Q96QD5 511 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 PLCD4Q9BRC7 762 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 SIKE1Q9BRV8 207 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 FIS1Q9Y3D6 152 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 TRAF6Q9Y4K3 522 aa9.71□□□□□ -0.85
CD44-207ENST00000425428 SNRNP200O75643 2136 aaKnown RBP9.71□□□□□ -0.86
CD44-207ENST00000425428 MN1Q10571 1320 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 A0A1W2PPV9 198 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 TRBC2A0A5B9 178 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SLC9B1P1A6NJY1 282 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 OR4F21O95013 312 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 C9P02748 559 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SERPIND1P05546 499 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SLC35G6P0C7Q6 338 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 MAGP20916 626 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 GRIA3P42263 894 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 ACY1Q03154 408 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 RELAQ04206 551 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 RGS1Q08116 209 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 KIAA1614Q5VZ46 1190 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SLCO4C1Q6ZQN7 724 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PRSS42Q7Z5A4 293 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 DDIASQ8IXT1 998 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 GPR135Q8IZ08 494 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CDYL2Q8N8U2 506 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 L3MBTL4Q8NA19 623 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CAMKVQ8NCB2 501 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PIWIL2Q8TC59 973 aaKnown RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 AGR3Q8TD06 166 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 AGAP11Q8TF27 550 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SELENOMQ8WWX9 145 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FAM122AQ96E09 287 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CHMP6Q96FZ7 201 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 C7orf26Q96N11 449 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 OR4K3Q96R72 315 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PHOX2BQ99453 314 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 MAP3K3Q99759 626 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 TRIM55Q9BYV6 548 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SHCBP1LQ9BZQ2 653 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SLC7A5P2Q9GIP4 190 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CCDC134Q9H6E4 229 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 NT5DC2Q9H857 520 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 RIC8BQ9NVN3 520 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 AHSPQ9NZD4 102 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SERTAD3Q9UJW9 196 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 VPS13AQ96RL7 3174 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PTPRZ1P23471 2315 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 MDC1Q14676 2089 aaKnown RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 A0A088AWK7 358 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 LY6G6EA0A0G2JKS1 128 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 D6RAR5 112 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SLC28A1O00337 649 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 OR7A17O14581 309 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 RGS14O43566 566 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PRICKLE3O43900 615 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 SRPX2O60687 465 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 CBFA2T3O75081 653 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 VPS4BO75351 444 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CAPN1P07384 714 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FGF4P08620 206 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 KITP10721 976 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 ZNF10P21506 573 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms