RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ATP5DP30049 168 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 TSFMP43897 325 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 CARSP49589 748 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 KCNK10P57789 538 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ARG2P78540 354 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 RNF187Q5TA31 235 aaPredicted RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 THEMIS2Q5TEJ8 643 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ZNF425Q6IV72 752 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 PRSS41Q7RTY9 318 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 KBTBD2Q8IY47 623 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 FAR1Q8WVX9 515 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 OR2A5Q96R48 311 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 TCF12Q99081 682 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 HIVEP3Q5T1R4 2406 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 MDC1Q14676 2089 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 DOCK10Q96BY6 2186 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 IGLV3-12A0A075B6K2 115 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 IGHV1-45A0A0A0MS14 117 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ZCWPW2A0A1B0GU75 182 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 E7ENX8 843 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 H7BY64 318 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 AP3B1O00203 1094 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ZG16O60844 167 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 VPS26AO75436 327 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 UQCRHP07919 91 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ITGAMP11215 1152 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 SLC1A2P43004 574 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 MPP1Q00013 466 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 CDK16Q00536 496 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 TAP2Q03519 686 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 PRDX1Q06830 199 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 THOC5Q13769 683 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 DSG2Q14126 1118 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 TLR1Q15399 786 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 C1QL3Q5VWW1 255 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 FAM180AQ6UWF9 173 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 CYHR1Q6ZMK1 362 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 MBOAT1Q6ZNC8 495 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 NDUFAF7Q7L592 441 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 PIWIL4Q7Z3Z4 852 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 ZC3H7AQ8IWR0 971 aaKnown RBP10.99□□□□□ -0.65
USP4-204ENST00000416417 CPNE9Q8IYJ1 553 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ARHGEF39Q8N4T4 335 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 OR9A4Q8NGU2 314 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 MAIP1Q8WWC4 291 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 CCDC138Q96M89 665 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 PRAP1Q96NZ9 151 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 TAAR6Q96RI8 345 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 GPR21Q99679 349 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 FAM114A2Q9NRY5 505 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 SAMD15Q9P1V8 674 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 MKL2Q9ULH7 1088 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 SH2B3Q9UQQ2 575 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 ZKSCAN5Q9Y2L8 839 aa10.99□□□□□ -0.65
USP4-204ENST00000416417 GOLGA6L6A8MZA4 724 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 PFDN6O15212 129 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 WISP2O76076 250 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 HAUS5O94927 633 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 ANXA5P08758 320 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 CCDC175P0C221 793 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 PAMP19021 973 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 CXCR2P25025 360 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 SOX11P35716 441 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 SLC26A3P40879 764 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 PGGT1BP53609 377 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 ADARP55265 1226 aaKnown RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 PCOLCEQ15113 449 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 FCRLBQ6BAA4 426 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 LANCL3Q6ZV70 420 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 FJX1Q86VR8 437 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 LRRC56Q8IYG6 542 aaPredicted RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 ASB11Q8WXH4 323 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 RERGQ96A58 199 aaPredicted RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 MAGOHBQ96A72 148 aaKnown RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 ALKBH8Q96BT7 664 aaKnown RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 LMF1Q96S06 567 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 NDNQ99608 321 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 C20orf96Q9NUD7 363 aaPredicted RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 OLAHQ9NV23 265 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 INTS10Q9NVR2 710 aaKnown RBP10.98□□□□□ -0.65
USP4-204ENST00000416417 ADAMTS6Q9UKP5 1117 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 CDC14AQ9UNH5 594 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 MAD1L1Q9Y6D9 718 aa10.98□□□□□ -0.65
USP4-204ENST00000416417 NOTCH2Q04721 2471 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 FAM237BA0A1B0GVD1 139 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 FEZF1A0PJY2 475 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SDR42E2A6NKP2 422 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 BANF1O75531 89 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 WFS1O76024 890 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SEC24DO94855 1032 aaPredicted RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 WDPCPO95876 746 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SERPINA7P05543 415 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 EDN3P14138 238 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 EZRP15311 586 aaKnown RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 IMPA1P29218 277 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 MAGEA6P43360 314 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 SARNPP82979 210 aaKnown RBP10.97□□□□□ -0.65
USP4-204ENST00000416417 ARHGAP19Q14CB8 494 aa10.97□□□□□ -0.65
USP4-204ENST00000416417 MFSD4BQ5TF39 518 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms