RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	FAM111A	Q96PZ2	611 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	OR6C1	Q96RD1	312 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	AIF1L	Q9BQI0	150 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	ERVK-6	Q9BXR3	956 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	FAM60A	Q9NP50	221 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	KCNK9	Q9NPC2	374 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	FBXO8	Q9NRD0	319 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	FGF21	Q9NSA1	209 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	RARRES3	Q9UL19	164 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	PLCL2	Q9UPR0	1127 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	MSRB2	Q9Y3D2	182 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	ASB1	Q9Y576	335 aa		12.63	□□□□□ -0.39
SF1-206	ENST00000413725	TMEM150C	B9EJG8	249 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725		E7EQ34	232 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	E2F3	O00716	465 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	POLR1C	O15160	346 aa	Predicted RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	TM9SF1	O15321	606 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	PRPF4	O43172	522 aa	Known RBP eCLIP	12.62	□□□□□ -0.39	3e-6	■■■■□ 20.9
SF1-206	ENST00000413725	H2AFY	O75367	372 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	TNFSF15	O95150	251 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ZWINT	O95229	277 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ITIH1	P19827	911 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	CXCR2	P25025	360 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	PRKAA2	P54646	552 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	MAGOH	P61326	146 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	RPS15A	P62244	130 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	CSNK1G2	P78368	415 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SHC2	P98077	582 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ASPH	Q12797	758 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	CAMK2B	Q13554	666 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	GTF2H2	Q13888	395 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	GPR19	Q15760	415 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	DEFB110	Q30KQ9	67 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	DCAF12	Q5T6F0	453 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	GTF2H2C	Q6P1K8	395 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	NXPE4	Q6UWF7	544 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	RNF44	Q7L0R7	432 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	PPP1R3B	Q86XI6	285 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	LSMEM2	Q8N112	164 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	DNAJC22	Q8N4W6	341 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	PPP4R1	Q8TF05	950 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SREK1	Q8WXA9	508 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	RERG	Q96A58	199 aa	Predicted RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	TEFM	Q96QE5	360 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	TAAR9	Q96RI9	348 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SH3GL2	Q99962	352 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ZFYVE21	Q9BQ24	234 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SELENOS	Q9BQE4	189 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ZPBP	Q9BS86	351 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	DDA1	Q9BW61	102 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	C12orf65	Q9H3J6	166 aa	Known RBP	12.62	□□□□□ -0.39
SF1-206	ENST00000413725	EHD1	Q9H4M9	534 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	IRAK4	Q9NWZ3	460 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SLC17A7	Q9P2U7	560 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	COPG2	Q9UBF2	871 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SERTAD3	Q9UJW9	196 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	PCTP	Q9UKL6	214 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	ANGPTL2	Q9UKU9	493 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	AK5	Q9Y6K8	562 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725	SCN2A	Q99250	2005 aa		12.62	□□□□□ -0.39
SF1-206	ENST00000413725		A0A0J9YVX5	310 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725		A0A1W2PNU3	283 aa	Predicted RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	TRABD2B	A6NFA1	517 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	LRRC14B	A6NHZ5	514 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725		G3V2L1	256 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	HAT1	O14929	419 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	CTSV	O60911	334 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	SASH3	O75995	380 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	RPS17	P08708	135 aa	Known RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	C1GALT1C1L	P0DN25	315 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	IMPDH1	P20839	514 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ARL1	P40616	181 aa	Predicted RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ETV5	P41161	510 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ITGA1	P56199	1179 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	DNAJB13	P59910	316 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	NAA20	P61599	178 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	IRF8	Q02556	426 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	CYP4F3	Q08477	520 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	LAPTM5	Q13571	262 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	RTP5	Q14D33	572 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	XKR6	Q5GH73	641 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	PAGE2B	Q5JRK9	111 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	CATSPERE	Q5SY80	951 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ATG9B	Q674R7	924 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	IGF2-AS	Q6U949	168 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	SLCO4C1	Q6ZQN7	724 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	GOLGA7	Q7Z5G4	137 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	MCAT	Q8IVS2	390 aa	Known RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	GPR135	Q8IZ08	494 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	KRT78	Q8N1N4	520 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	OR4K1	Q8NGD4	311 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ATP6V1E2	Q96A05	226 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ZNF501	Q96CX3	271 aa	Predicted RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	THAP11	Q96EK4	314 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	L3HYPDH	Q96EM0	354 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	PTCD3	Q96EY7	689 aa	Known RBP	12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ATP6V1G3	Q96LB4	118 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	TMEM237	Q96Q45	408 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	C1QTNF3	Q9BXJ4	246 aa		12.61	□□□□□ -0.39
SF1-206	ENST00000413725	ASPSCR1	Q9BZE9	553 aa		12.61	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms