RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GRIA3P42263 894 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CASP2P42575 452 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 SEC24CP53992 1094 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 PCDH1Q08174 1060 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 NAA25Q14CX7 972 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 SNAP47Q5SQN1 464 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CLEC6AQ6EIG7 209 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 FIGLAQ6QHK4 219 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 TBC1D19Q8N5T2 526 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 ABHD11Q8NFV4 315 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 MAP3K3Q99759 626 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 TNFRSF12AQ9NP84 129 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 ATXN7L1Q9ULK2 861 aaPredicted RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 TIMM22Q9Y584 194 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 GMNCA6NCL1 334 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 TMEM233B4DJY2 109 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 KIF1CO43896 1103 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 CBFA2T3O75081 653 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CPNE6O95741 557 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CHEK2O96017 543 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 FGF4P08620 206 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 UROSP10746 265 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 SERPINB3P29508 390 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 LSSP48449 732 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CSNK1G2P78368 415 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 RBBP5Q15291 538 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 ZRSR2Q15696 482 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 GGTA1PQ4G0N0 100 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 CACHD1Q5VU97 1274 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 GRHL2Q6ISB3 625 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 WDR74Q6RFH5 385 aaPredicted RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 KIAA2013Q8IYS2 634 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 BAHD1Q8TBE0 780 aaPredicted RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 PIWIL2Q8TC59 973 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 UBE2E3Q969T4 207 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 WDR34Q96EX3 536 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 ZNF317Q96PQ6 595 aaPredicted RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 GFM1Q96RP9 751 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 CD180Q99467 661 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 NUDT22Q9BRQ3 303 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 SLC29A3Q9BZD2 475 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 FAM107BQ9H098 131 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 SEMA6CQ9H3T2 930 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 C1GALT1Q9NS00 363 aa17.37■□□□□ 0.37
SDC1-203ENST00000403076 GEMIN8Q9NWZ8 242 aaKnown RBP17.37■□□□□ 0.37
SDC1-203ENST00000403076 DNAH14Q0VDD8 3507 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 RIF1Q5UIP0 2472 aaKnown RBP17.36■□□□□ 0.37
SDC1-203ENST00000403076 IGKV1-8A0A0C4DH67 115 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 A0A1W2PQM1 296 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 TLCD2A6NGC4 264 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 SLC9B1P1A6NJY1 282 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 KRT6AP02538 564 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 KRT6BP04259 564 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 GP1BAP07359 652 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 PCNAP12004 261 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 CD22P20273 847 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 CSF2RBP32927 897 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 KRT6CP48668 564 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 FOXA1P55317 472 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 SGO1Q5FBB7 561 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 MED27Q6P2C8 311 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 TMEM71Q6P5X7 295 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 ZUFSPQ96AP4 578 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 REPS1Q96D71 796 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 MTFMTQ96DP5 389 aaKnown RBP17.36■□□□□ 0.37
SDC1-203ENST00000403076 FAR2Q96K12 515 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 DPYSL5Q9BPU6 564 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 PLCD4Q9BRC7 762 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 NSRP1Q9H0G5 558 aaKnown RBP17.36■□□□□ 0.37
SDC1-203ENST00000403076 ELOVL6Q9H5J4 265 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 ANKMY1Q9P2S6 941 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 HAO1Q9UJM8 370 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 SNX6Q9UNH7 406 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 PCDHGA11Q9Y5H2 935 aa17.36■□□□□ 0.37
SDC1-203ENST00000403076 UNC13CQ8NB66 2214 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 FEZF1A0PJY2 475 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 CASC3O15234 703 aaKnown RBP17.35■□□□□ 0.37
SDC1-203ENST00000403076 MAP3K7O43318 606 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 OR1F1O43749 312 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 GFRA3O60609 400 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 ST6GAL1P15907 406 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 ARL4DP49703 201 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 ACADVLP49748 655 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 LIMK1P53667 647 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 REEP5Q00765 189 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 CFHR1Q03591 330 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 IFT88Q13099 833 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 SQSTM1Q13501 440 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 KANK2Q63ZY3 851 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 TMIGD1Q6UXZ0 262 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 CPLX4Q7Z7G2 160 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 PIP4P1Q86T03 277 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 PAQR7Q86WK9 346 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 FAM129CQ86XR2 697 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 PLD3Q8IV08 490 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 WDR75Q8IWA0 830 aaKnown RBP17.35■□□□□ 0.37
SDC1-203ENST00000403076 ZNF740Q8NDX6 193 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 OR4K1Q8NGD4 311 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 CCT6BQ92526 530 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 PRR11Q96HE9 360 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms