RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NUAK2Q9H093 628 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 ZFP14Q9HCL3 533 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 ZNF304Q9HCX3 659 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 ITM2CQ9NQX7 267 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 PAQR5Q9NXK6 330 aaPredicted RBP10.82□□□□□ -0.68
CUX1-204ENST00000393824 CCDC59Q9P031 241 aaKnown RBP10.82□□□□□ -0.68
CUX1-204ENST00000393824 BTRCQ9Y297 605 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 BOLA1Q9Y3E2 137 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 PEX16Q9Y5Y5 336 aa10.82□□□□□ -0.68
CUX1-204ENST00000393824 TRAV19A0A0A6YYK7 116 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 DRGXA6NNA5 263 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 DFFAO00273 331 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 GFRA2O00451 464 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SIX3O95343 332 aaPredicted RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 S1PR4O95977 384 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 MTHFD2P13995 350 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 CD1DP15813 335 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 EFNA1P20827 205 aaPredicted RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 PRKACGP22612 351 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ACVRL1P37023 503 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SERPINH1P50454 418 aaKnown RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 SUOXP51687 545 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 NRG1Q02297 640 aaPredicted RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 PRKG2Q13237 762 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PLA2G4EQ3MJ16 856 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 XKR7Q5GH72 579 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ADGRF1Q5T601 910 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 NXNL2Q5VZ03 156 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 KDELC1Q6UW63 502 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ZNF438Q7Z4V0 828 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 CCDC28AQ8IWP9 274 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 NPAS3Q8IXF0 933 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ZNF540Q8NDQ6 660 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 OR8J3Q8NGG0 315 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 IPCEF1Q8WWN9 437 aaPredicted RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 FGF13Q92913 245 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PLD4Q96BZ4 506 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SLC47A1Q96FL8 570 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 RIPOR3Q96MK2 946 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 COQ7Q99807 217 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 CCDC32Q9BV29 185 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 GON7Q9BXV9 100 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SLC25A51Q9H1U9 297 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 TFB2MQ9H5Q4 396 aaKnown RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 ACTR8Q9H981 624 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SFXN1Q9H9B4 322 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 C12orf4Q9NQ89 552 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 RBM22Q9NW64 420 aaKnown RBP eCLIP10.81□□□□□ -0.68
CUX1-204ENST00000393824 KCNN3Q9UGI6 736 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 RAPGEFL1Q9UHV5 662 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 HMX3A6NHT5 357 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 B8ZZF3 427 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 LOC110117498-PIK3R3F6TDL0 507 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PGLSO95336 258 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PAPLNO95428 1278 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 YES1P07947 543 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 GLULP15104 373 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 HOXB6P17509 224 aaKnown RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 FDXRP22570 491 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 IGFBP4P22692 258 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PRIM2P49643 509 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ERVK-8P63133 956 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 FCHO2Q0JRZ9 810 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 LCP2Q13094 533 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ADAM15Q13444 863 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 LAPTM5Q13571 262 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 GALNT3Q14435 633 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 AFMIDQ63HM1 303 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ANKRD54Q6NXT1 300 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 TPGS1Q6ZTW0 290 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 UTS2BQ765I0 119 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 HORMAD1Q86X24 394 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 EFHBQ8N7U6 833 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 FBXO30Q8TB52 745 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SETD6Q8TBK2 473 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 BRSK1Q8TDC3 778 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PIK3R3Q92569 461 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 FCGR1BQ92637 280 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PYCR2Q96C36 320 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ASIC4Q96FT7 647 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 HMCESQ96FZ2 354 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ZNF599Q96NL3 588 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 NSUN5Q96P11 429 aaKnown RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 AIFM2Q9BRQ8 373 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ZYG11BQ9C0D3 744 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 RUBCNLQ9H714 662 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 PLSCR3Q9NRY6 295 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 TDP1Q9NUW8 608 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 ACOXLQ9NUZ1 547 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 TAS2R9Q9NYW1 312 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 UBA2Q9UBT2 640 aaPredicted RBP10.81□□□□□ -0.68
CUX1-204ENST00000393824 ADGRE2Q9UHX3 823 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 STOML2Q9UJZ1 356 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 SPEF1Q9Y4P9 236 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 DOCK8Q8NF50 2099 aa10.81□□□□□ -0.68
CUX1-204ENST00000393824 MROH6A6NGR9 719 aa10.8□□□□□ -0.68
CUX1-204ENST00000393824 F5H5T6 163 aa10.8□□□□□ -0.68
CUX1-204ENST00000393824 J3KR12 359 aa10.8□□□□□ -0.68
CUX1-204ENST00000393824 POLR1CO15160 346 aaPredicted RBP10.8□□□□□ -0.68
CUX1-204ENST00000393824 PMPCBO75439 489 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms