RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 EME1Q96AY2 570 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 RTKNQ9BST9 563 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 EPHX3Q9H6B9 360 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 PDFQ9HBH1 243 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 ALKBH4Q9NXW9 302 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 RSL24D1Q9UHA3 163 aaKnown RBP9.98□□□□□ -0.81
COL6A3-205ENST00000392004 OR10H1Q9Y4A9 318 aa9.98□□□□□ -0.81
COL6A3-205ENST00000392004 POLEQ07864 2286 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 K7EPI3 171 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 BTN3A3O00478 584 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 AQP9O43315 295 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PAPSS2O95340 614 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CHRNB1P11230 501 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CDK4P11802 303 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 C2orf80Q0P641 193 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CBX3Q13185 183 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 SF3A2Q15428 464 aaKnown RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MED27Q6P2C8 311 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 TRIM40Q6P9F5 258 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 GALNT10Q86SR1 603 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 TEX26Q8N6G2 289 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 KYQ8NBH2 561 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 TSPAN14Q8NG11 270 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 DCBLD2Q96PD2 775 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CTRCQ99895 268 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MGAMO43451 1857 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 A0A1B0GTW7 788 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 VEGFDO43915 354 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 ANXA4P09525 319 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 NT5EP21589 574 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 FCARP24071 287 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PRDX6P30041 224 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 BTN3A2P78410 334 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 SIM1P81133 766 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PLOD1Q02809 727 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 KLF10Q13118 480 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 TAZQ16635 292 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 C6orf52Q5T4I8 152 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 AGBL4Q5VU57 503 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 IL23RQ5VWK5 629 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 POMZP3Q6PJE2 187 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 FRMD7Q6ZUT3 714 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 TTLL10Q6ZVT0 673 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 RRM2BQ7LG56 351 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 VRK3Q8IV63 474 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CLYBLQ8N0X4 340 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 REPS1Q96D71 796 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 ALG14Q96F25 216 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MRGPRX3Q96LB0 322 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CDRT15Q96T59 188 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 C20orf27Q9GZN8 174 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 POLG2Q9UHN1 485 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 KLF15Q9UIH9 416 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PRPF19Q9UMS4 504 aaKnown RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 OR51B4Q9Y5P0 310 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MYO1GB0I1T2 1018 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PIP5K1BO14986 540 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 SLC35E2BP0CK96 405 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MAPK12P53778 367 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PKNOX1P55347 436 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 NFATC4Q14934 902 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 CCSMST1Q4G0I0 132 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 SULT1C3Q6IMI6 304 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 RNF111Q6ZNA4 994 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 AMIGO2Q86SJ2 522 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PATL1Q86TB9 770 aaKnown RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PELI3Q8N2H9 469 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 RNF175Q8N4F7 328 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 OR52B6Q8NGF0 335 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 FRS2Q8WU20 508 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MR1Q95460 341 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 FUBP1Q96AE4 644 aaKnown RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 RTP4Q96DX8 246 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 MMABQ96EY8 250 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF696Q9H7X3 374 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 INTS7Q9NVH2 962 aaKnown RBP9.97□□□□□ -0.81
COL6A3-205ENST00000392004 PISDQ9UG56 409 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 ACSL5Q9ULC5 683 aa9.97□□□□□ -0.81
COL6A3-205ENST00000392004 H3BSA7 217 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 PPP6CO00743 305 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 COQ9O75208 318 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 LBPP18428 481 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 CD27P26842 260 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 CLCN2P51788 898 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 MTTPP55157 894 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 TBPL1P62380 186 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 RACK1P63244 317 aaKnown RBP9.96□□□□□ -0.81
COL6A3-205ENST00000392004 HSPB3Q12988 150 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 PWP1Q13610 501 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 INAVAQ3KP66 663 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 OR5M3Q8NGP4 307 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 TWIST2Q8WVJ9 160 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 YIPF4Q9BSR8 244 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 RETREG1Q9H6L5 497 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 FBRSQ9HAH7 460 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 PLGRKTQ9HBL7 147 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 TM9SF3Q9HD45 589 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 MOCS1Q9NZB8 636 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 PSME2Q9UL46 239 aa9.96□□□□□ -0.81
COL6A3-205ENST00000392004 HDAC3O15379 428 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms