RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ARMC5Q96C12 935 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 YIPF4Q9BSR8 244 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 TMED9Q9BVK6 235 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 GATA5Q9BWX5 397 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF700Q9H0M5 742 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 DENND2DQ9H6A0 471 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 METTL7AQ9H8H3 244 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 AQP12BA6NM10 295 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CDC7O00311 574 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 BMP6P22004 513 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 GJA8P48165 433 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 TAS2R43P59537 309 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 LRIF1Q5T3J3 769 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 DRICH1Q6PGQ1 229 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 MARCH9Q86YJ5 346 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 AQP12AQ8IXF9 295 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 LGI4Q8N135 537 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 HMGB4Q8WW32 186 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 YTHDF1Q9BYJ9 559 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC5A7Q9GZV3 580 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ZIM2Q9NZV7 527 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 GRHPRQ9UBQ7 328 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 A0A0G2JPF8 293 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 HNRNPCL3B7ZW38 293 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 BTBD19C9JJ37 291 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 E2F3O00716 465 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ARL6IP5O75915 188 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 TGFB1P01137 390 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 PDYNP01213 254 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 HNRNPCL4P0DMR1 293 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 SELENOVP59797 346 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 MERTKQ12866 999 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 SEC23BQ15437 767 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 OR56A1Q8NGH5 318 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ITPAQ9BY32 194 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 RMI1Q9H9A7 625 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CLIC1O00299 241 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 VIPR1P32241 457 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CDKN1CP49918 316 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 PRMT2P55345 433 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 DAG1Q14118 895 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 PDGFRLQ15198 375 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ARHGAP40Q5TG30 622 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 NIPAL1Q6NVV3 410 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 MOB2Q70IA6 237 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM156Q8N614 296 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 FITM2Q8N6M3 262 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CMKLR1Q99788 373 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ST6GALNAC4Q9H4F1 302 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 TDP1Q9NUW8 608 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 GNG8Q9UK08 70 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 EME2A4GXA9 379 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 KLK1P06870 262 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ACP5P13686 325 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 NFATC2Q13469 925 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 STOML3Q8TAV4 291 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 LRRC58Q96CX6 371 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 PLSCR1O15162 318 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 RPP14O95059 124 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ATP1B2P14415 290 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 ST3GAL3Q11203 375 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CRHR2Q13324 411 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 NPTX1Q15818 432 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC9B2Q86UD5 537 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CERS5Q8N5B7 392 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 FCRL5Q96RD9 977 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 PCDH10Q9P2E7 1040 aa12.47□□□□□ -0.41
CCDC88C-204ENST00000389857 CPED1A4D0V7 1026 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 BCHEP06276 602 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 PET100P0DJ07 73 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 DHPSP49366 369 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 BANPQ8N9N5 519 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 S100A16Q96FQ6 103 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 AP1S3Q96PC3 154 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 TUBGCP5Q96RT8 1024 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 CD180Q99467 661 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 HTR1AP08908 422 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 CLRN1P58418 232 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 RALGPS1Q5JS13 557 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 ANKRD26P1Q6NSI1 321 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 IQCKQ8N0W5 287 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 POMPQ9Y244 141 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 ERI3O43414 337 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 ANXA3P12429 323 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC3A1Q07837 685 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 BLMHQ13867 455 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 LRRC73Q5JTD7 316 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 PRSS55Q6UWB4 352 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 FAM86B1Q8N7N1 296 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 MAFFQ9ULX9 164 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 SPATA31D1Q6ZQQ2 1576 aa12.46□□□□□ -0.41
CCDC88C-204ENST00000389857 A0A1B0GVI7 797 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 DPPA5A6NC42 116 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 VNN2O95498 520 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 PRLP01236 227 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 LHCGRP22888 699 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 C3orf33Q6P1S2 294 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 TUBA3EQ6PEY2 450 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 SH3RF2Q8TEC5 729 aa12.46□□□□□ -0.42
CCDC88C-204ENST00000389857 OSTF1Q92882 214 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms