RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FAM91A1Q658Y4 838 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 C11orf63Q6NUN7 778 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 PTAR1Q7Z6K3 402 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 IQCA1Q86XH1 822 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 KLHL7Q8IXQ5 586 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 OR11H4Q8NGC9 324 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 VANGL1Q8TAA9 524 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 OCC1Q8TAD7 63 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 GDAP1Q8TB36 358 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 TRAF3IP1Q8TDR0 691 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC107Q8WV48 283 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 HEXDCQ8WVB3 486 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ST6GALNAC6Q969X2 333 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 NSL1Q96IY1 281 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 SPATA33Q96N06 139 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 COPS7BQ9H9Q2 264 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 GKN1Q9NS71 199 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ANGPTL3Q9Y5C1 460 aa1.89□□□□□ -2.11
VPS13A-206ENST00000376646 ZFP37Q9Y6Q3 630 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-206ENST00000376646 A0A087WV48 116 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 A0A1W2PPK0 400 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PSMA7O14818 248 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 GSRP00390 522 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 GPIP06744 558 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 VIMP08670 466 aaKnown RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SAGP10523 405 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 LBPP18428 481 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PSMA3P25788 255 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 KCNJ1P48048 391 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PDX1P52945 283 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 NAGLUP54802 743 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 GSDMDP57764 484 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PTENP60484 403 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 YWHAHQ04917 246 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ITPRIPL2Q3MIP1 535 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 LACTB2Q53H82 288 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 LRRC73Q5JTD7 316 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SHEQ5VZ18 495 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ENPP7Q6UWV6 458 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF554Q86TJ5 538 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PIGZQ86VD9 579 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 LMNTD2Q8IXW0 634 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CDK20Q8IZL9 346 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ABCA7Q8IZY2 2146 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 MAPKAPK5-AS1Q8N8E1 139 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CORO2AQ92828 525 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CLEC7AQ9BXN2 247 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 FGFBP2Q9BYJ0 223 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PRRG4Q9BZD6 226 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 P2RY12Q9H244 342 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF701Q9NV72 531 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ARGLU1Q9NWB6 273 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 TXNDC16Q9P2K2 825 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CACNG4Q9UBN1 327 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 WDR83OSQ9Y284 106 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 TDRD15B5MCY1 1934 aaKnown RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 A0A1W2PPW3 197 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 A4D1N5 150 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SIX3O95343 332 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SUPT20HL2P0C7V6 817 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ZSCAN5DPP0CG00 497 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CAPN2P17655 700 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 CA4P22748 312 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 DLK1P80370 383 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 DRP2Q13474 957 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 UGT3A2Q3SY77 523 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SPDYCQ5MJ68 293 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 TMEM182Q6ZP80 229 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 Q6ZRP5 223 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 OTOAQ7RTW8 1153 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PIWIL3Q7Z3Z3 882 aaKnown RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 RTN4RL2Q86UN3 420 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 LACC1Q8IV20 430 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 TIGD4Q8IY51 512 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 EID3Q8N140 333 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 OR4K1Q8NGD4 311 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PIGBQ92521 554 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 PROX1Q92786 737 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 FAM71F1Q96KD3 344 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 FAM20AQ96MK3 541 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 TRIM51Q9BSJ1 452 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 INPP5KQ9BT40 448 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 URM1Q9BTM9 101 aaKnown RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 RSPH9Q9H1X1 276 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SNX25Q9H3E2 840 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ATP13A3Q9H7F0 1226 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 SEPT10Q9P0V9 454 aa1.88□□□□□ -2.11
VPS13A-206ENST00000376646 ARMCX3Q9UH62 379 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-206ENST00000376646 A0A0U1RQK1 487 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 LOC101059948A0A1B0GTJ6 334 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MEX3AA1L020 520 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF320A2RRD8 509 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PI4K2BG5E9Z4 385 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RNASEH1O60930 286 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PIGNO95427 931 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 IRF2P14316 349 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 EPCAMP16422 314 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CASTP20810 708 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SHC1P29353 583 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms