RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 SETD7Q8WTS6 366 aaKnown RBP13.37□□□□□ -0.27
COL4A1-201ENST00000375820 UCK2Q9BZX2 261 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 CLIC1O00299 241 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 NPHS1O60500 1241 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 FAM110CQ1W6H9 321 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 PHOSPHO1Q8TCT1 267 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 NCSTNQ92542 709 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 HSPBAP1Q96EW2 488 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 TMEM74Q96NL1 305 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 RC3H2Q9HBD1 1191 aaKnown RBP13.37□□□□□ -0.27
COL4A1-201ENST00000375820 CYTH4Q9UIA0 394 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 MEMO1Q9Y316 297 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 HEBP2Q9Y5Z4 205 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SCDO00767 359 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 SYN3O14994 580 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 HERVK_113P63132 956 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ZNF662Q6ZS27 426 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PNLDC1Q8NA58 520 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ZNF347Q96SE7 839 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 WACQ9BTA9 647 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ERVK-6Q9BXR3 956 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MED11Q9P086 117 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 AASSQ9UDR5 926 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 GIMAP2Q9UG22 337 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MAFBQ9Y5Q3 323 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 A0A1W2PPL8 197 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 FAM234BA2RU67 622 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 BHMG1C9JSJ3 638 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PRKD3O94806 890 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 HLA-EP13747 358 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 HNRNPH3P31942 346 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 FOXN2P32314 431 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 UFM1P61960 85 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PHC1P78364 1004 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TATDN1Q6P1N9 297 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PLCZ1Q86YW0 608 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 BANPQ8N9N5 519 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TESCQ96BS2 214 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 OR52B2Q96RD2 323 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TMEM168Q9H0V1 697 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 DHX33Q9H6R0 707 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 KCND1Q9NSA2 647 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ERVK-18Q9QC07 812 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PCDHGB5Q9Y5G0 923 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TLL2Q9Y6L7 1015 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TMEM63AO94886 807 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 BNIP3Q12983 259 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ZNF648Q5T619 568 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TTLL10Q6ZVT0 673 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 GPAT4Q86UL3 456 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TOMM5Q8N4H5 51 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 AQP11Q8NBQ7 271 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 OR52E4Q8NGH9 312 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CASTOR1Q8WTX7 329 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TMBIM1Q969X1 311 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CNTN3Q9P232 1028 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 VPS29Q9UBQ0 182 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ZDHHC2Q9UIJ5 367 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TMEM5Q9Y2B1 443 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 KCTD3Q9Y597 815 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ATRNL1Q5VV63 1379 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ROBO3Q96MS0 1386 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 RIMS1Q86UR5 1692 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 NRP1O14786 923 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PI15O43692 258 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CD40LGP29965 261 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MECP2P51608 486 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PPIGQ13427 754 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 LRRC37A5PQ49AS3 106 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CDKL4Q5MAI5 379 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ARHGAP40Q5TG30 622 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MFSD5Q6N075 450 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 THAP3Q8WTV1 239 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MSLNLQ96KJ4 702 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PCBD2Q9H0N5 130 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 SUV39H2Q9H5I1 410 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 P2RX2Q9UBL9 471 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ATXN7L1Q9ULK2 861 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 ARPC2O15144 300 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 VNN1O95497 513 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 GNSP15586 552 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 PAX3P23760 479 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CASRP41180 1078 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MERTKQ12866 999 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 MBLAC2Q68D91 279 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 SLC15A3Q8IY34 581 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TMEM156Q8N614 296 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 BPIFB1Q8TDL5 484 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 CANT1Q8WVQ1 401 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 NKD2Q969F2 451 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 TNFRSF10DQ9UBN6 386 aa13.36□□□□□ -0.27
COL4A1-201ENST00000375820 RPL36Q9Y3U8 105 aaKnown RBP13.36□□□□□ -0.27
COL4A1-201ENST00000375820 A0A1W2PPK0 400 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 CYP11A1P05108 521 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 HOXA10P31260 410 aaPredicted RBP13.35□□□□□ -0.27
COL4A1-201ENST00000375820 PTGS2P35354 604 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 PBX1P40424 430 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 RAB11FIP2Q7L804 512 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 ZNF527Q8NB42 609 aa13.35□□□□□ -0.27
COL4A1-201ENST00000375820 KCTD7Q96MP8 289 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms