RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 AGTRAPQ6RW13 159 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 TMEM207Q6UWW9 146 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 SHISA6Q6ZSJ9 500 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 MAATS1Q7Z4T9 603 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 PALM2Q8IXS6 379 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 TEX19Q8NA77 164 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 BBOF1Q8ND07 529 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 FAM45AQ8TCE6 357 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 IP6K3Q96PC2 410 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 ATG10Q9H0Y0 220 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 WDR54Q9H977 334 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 ZNF304Q9HCX3 659 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 CCDC177Q9NQR7 707 aaPredicted RBP17.53■□□□□ 0.4
CLN3-202ENST00000355477 P4HTMQ9NXG6 502 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 GRHL1Q9NZI5 618 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 WHRNQ9P202 907 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 ZFATQ9P243 1243 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 IKZF3Q9UKT9 509 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 CORO1CQ9ULV4 474 aaPredicted RBP17.53■□□□□ 0.4
CLN3-202ENST00000355477 EZRP15311 586 aaKnown RBP17.52■□□□□ 0.4
CLN3-202ENST00000355477 CSRP3P50461 194 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 RRADP55042 308 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 KCNC4Q03721 635 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 SP140Q13342 867 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 RAPSNQ13702 412 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 IGFBP7Q16270 282 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 MUM1Q2TAK8 710 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 DCAF10Q5QP82 559 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 CAPN12Q6ZSI9 719 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 ADCK2Q7Z695 626 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 STRA8Q7Z7C7 330 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 ZC3HC1Q86WB0 502 aaKnown RBP17.52■□□□□ 0.4
CLN3-202ENST00000355477 ARHGEF39Q8N4T4 335 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 CSNK1A1LQ8N752 337 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 COL26A1Q96A83 441 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 CABS1Q96KC9 395 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 SOX17Q9H6I2 414 aaPredicted RBP17.52■□□□□ 0.4
CLN3-202ENST00000355477 SMYD2Q9NRG4 433 aa17.52■□□□□ 0.4
CLN3-202ENST00000355477 UTP6Q9NYH9 597 aaKnown RBP17.52■□□□□ 0.4
CLN3-202ENST00000355477 SCN2AQ99250 2005 aa17.52■□□□□ 0.39
CLN3-202ENST00000355477 VSTM2BA6NLU5 285 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 PEX12O00623 359 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 P2RX6O15547 441 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 STATHP02808 62 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 SAT1P21673 171 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 SSTR1P30872 391 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 EMP3P54852 163 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 SNRPNP63162 240 aaKnown RBP17.51■□□□□ 0.39
CLN3-202ENST00000355477 CALCOCO2Q13137 446 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 NAE1Q13564 534 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 TRADDQ15628 312 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 PRAMEF13Q5VWM6 474 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 PRMT9Q6P2P2 845 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 PYROXD1Q8WU10 500 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 ALKBH8Q96BT7 664 aaKnown RBP17.51■□□□□ 0.39
CLN3-202ENST00000355477 PDLIM5Q96HC4 596 aaKnown RBP17.51■□□□□ 0.39
CLN3-202ENST00000355477 MCMBPQ9BTE3 642 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 SAYSD1Q9NPB0 183 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 TMEM184CQ9NVA4 438 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 COL12A1Q99715 3063 aa17.51■□□□□ 0.39
CLN3-202ENST00000355477 FAM95CA0A1B0GW59 222 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 NDC80O14777 642 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 HIST1H2AGP0C0S8 130 aaPredicted RBP17.5■□□□□ 0.39
CLN3-202ENST00000355477 NPPBP16860 134 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 HIST1H2ADP20671 130 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 MMP11P24347 488 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 TAS2R39P59534 338 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 CSNK1G2P78368 415 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 ZNF460Q14592 562 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 NADK2Q4G0N4 442 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 SLC26A11Q86WA9 606 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 STT3BQ8TCJ2 826 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 RERGQ96A58 199 aaPredicted RBP17.5■□□□□ 0.39
CLN3-202ENST00000355477 PYCR2Q96C36 320 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 HIST1H2AHQ96KK5 128 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 FER1L6-AS2Q96M78 137 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 HIST1H2AJQ99878 128 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 MESP1Q9BRJ9 268 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 H2AFJQ9BTM1 129 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 SGPP1Q9BX95 441 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 PCBD2Q9H0N5 130 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 CLMPQ9H6B4 373 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 ARL15Q9NXU5 204 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 GPR83Q9NYM4 423 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 CDC23Q9UJX2 597 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 ZNF451Q9Y4E5 1061 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 HS3ST3B1Q9Y662 390 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 SHANK1Q9Y566 2161 aa17.5■□□□□ 0.39
CLN3-202ENST00000355477 LRRK2Q5S007 2527 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 HECTD1Q9ULT8 2610 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 CXorf49A8MYA2 514 aaPredicted RBP17.49■□□□□ 0.39
CLN3-202ENST00000355477 AGPSO00116 658 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 SOCS6O14544 535 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 FFAR3O14843 346 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 GPR42O15529 346 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 FOXS1O43638 330 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 ALOX12BO75342 701 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 ZNF37AP17032 561 aaPredicted RBP17.49■□□□□ 0.39
CLN3-202ENST00000355477 MLLT10P55197 1068 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 KLC1Q07866 573 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms