RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SGK2Q9HBY8 427 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 RAD18Q9NS91 495 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 NFKBIL1Q9UBC1 381 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-202ENST00000352886 A0A1W2PPW3 197 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 CATP04040 527 aaKnown RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 JUNBP17275 347 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 MATN1P21941 496 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 NTHL1P78549 312 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 CD47Q08722 323 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 VMACQ2NL98 169 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 GRHL2Q6ISB3 625 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 OR8J2Q8NGG1 315 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 FAM81AQ8TBF8 368 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 PRM3Q9NNZ6 103 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ABCG2Q9UNQ0 655 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 KCNK5O95279 499 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 FGF19O95750 216 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ELFN1P0C7U0 828 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 EFNA1P20827 205 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 IMPA1P29218 277 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 PBLDP30039 288 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 PRLHRP49683 370 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 TMEM115Q12893 351 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 GRIN2CQ14957 1233 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 SKIV2LQ15477 1246 aaKnown RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 FGD3Q5JSP0 725 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ZZZ3Q8IYH5 903 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 AP2M1Q96CW1 435 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ZSWIM3Q96MP5 696 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 VPS35Q96QK1 796 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 FAM83CQ9BQN1 747 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 FAM120CQ9NX05 1096 aaKnown RBP21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ITM2BQ9Y287 266 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 BTBD3Q9Y2F9 522 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 ORC6Q9Y5N6 252 aa21.07■□□□□ 0.96
SHMT1-202ENST00000352886 H0YIV9 168 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 YY2O15391 372 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 ETHE1O95571 254 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 LAMP1P11279 417 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 GPX2P18283 190 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 AGXTP21549 392 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 HNF4AP41235 474 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 MAPK10P53779 464 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 GTF2H3Q13889 308 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 ACOX1Q15067 660 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 SHQ1Q6PI26 577 aaKnown RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 CNDP2Q96KP4 475 aaKnown RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 PKP4Q99569 1192 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 CCM2Q9BSQ5 444 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 IRAK3Q9Y616 596 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 SLC5A10A0PJK1 596 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 NOL3O60936 208 aaKnown RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 PDHA2P29803 388 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 MMP12P39900 470 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 RAD23AP54725 363 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 GRSF1Q12849 480 aaKnown RBP eCLIP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 LAPTM4AQ15012 233 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 LIPIQ6XZB0 460 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 SPARTQ8N0X7 666 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 MRPL43Q8N983 215 aaKnown RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 C11orf24Q96F05 449 aaPredicted RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 DPH2Q9BQC3 489 aaPredicted RBP21.06■□□□□ 0.96
SHMT1-202ENST00000352886 IL1RAPQ9NPH3 570 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 LMCD1Q9NZU5 365 aa21.06■□□□□ 0.96
SHMT1-202ENST00000352886 SEC14L2O76054 403 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 MYO1DO94832 1006 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 ISL1P61371 349 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 ZNF691Q5VV52 312 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 LAIR2Q6ISS4 152 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 TMEM220Q6QAJ8 160 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 PTOV1Q86YD1 416 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 C1orf52Q8N6N3 182 aaKnown RBP21.05■□□□□ 0.96
SHMT1-202ENST00000352886 SH3KBP1Q96B97 665 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 BARD1Q99728 777 aaKnown RBP21.05■□□□□ 0.96
SHMT1-202ENST00000352886 LHPPQ9H008 270 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 EXD2Q9NVH0 621 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 TMEM9Q9P0T7 183 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 BLOC1S6Q9UL45 172 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 PCM1Q15154 2024 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 MITFO75030 526 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-202ENST00000352886 IGFBP5P24593 272 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 KDELR2P33947 212 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 HTRA4P83105 476 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-202ENST00000352886 RFX4Q33E94 735 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 OR2T5Q6IEZ7 315 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 GALNT5Q7Z7M9 940 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 OR2T29Q8NH02 315 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 SNX19Q92543 992 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 THAP11Q96EK4 314 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 NRBF2Q96F24 287 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 WRAP53Q9BUR4 548 aaKnown RBP21.05■□□□□ 0.96
SHMT1-202ENST00000352886 DUSP26Q9BV47 211 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 BRF2Q9HAW0 419 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 DKK3Q9UBP4 350 aa21.05■□□□□ 0.96
SHMT1-202ENST00000352886 hCG_2039718K7EN88 272 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 NPC1O15118 1278 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 SCAMP2O15127 329 aaKnown RBP21.04■□□□□ 0.96
SHMT1-202ENST00000352886 FOXD2O60548 495 aaPredicted RBP21.04■□□□□ 0.96
SHMT1-202ENST00000352886 HTR1AP08908 422 aa21.04■□□□□ 0.96
SHMT1-202ENST00000352886 GSTM2P28161 218 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms