RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CRYGNQ8WXF5 182 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 SCLYQ96I15 445 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 TMEM74Q96NL1 305 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 GPR88Q9GZN0 384 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 C9IYK1 514 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 ARVCFO00192 962 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 CLIC1O00299 241 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 CACNB4O00305 520 aaPredicted RBP11.21□□□□□ -0.62
VPS39-201ENST00000318006 OR10H2O60403 315 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 CREG1O75629 220 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 PTTG1O95997 202 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 IGFBP4P22692 258 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 GRIA2P42262 883 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 PNLIPRP1P54315 467 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 GJA9P57773 515 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 TCEAL5Q5H9L2 206 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 QSOX2Q6ZRP7 698 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 TMEM17Q86X19 198 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.21□□□□□ -0.62
VPS39-201ENST00000318006 SIDT2Q8NBJ9 832 aaKnown RBP11.21□□□□□ -0.62
VPS39-201ENST00000318006 ZNF354BQ96LW1 612 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 ZNF599Q96NL3 588 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 FERD3LQ96RJ6 166 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 NPY6RQ99463 290 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 ATG10Q9H0Y0 220 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 VRTNQ9H8Y1 702 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 TM9SF3Q9HD45 589 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 MARK1Q9P0L2 795 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 ASB3Q9Y575 518 aa11.21□□□□□ -0.62
VPS39-201ENST00000318006 ZNF701M0R085 212 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 SLC25A12O75746 678 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 C8AP07357 584 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 DGKQP52824 942 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MLLT6P55198 1093 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 NAE1Q13564 534 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CEACAM7Q14002 265 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CBX2Q14781 532 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 PAFAH1B3Q15102 231 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 CRB2Q5IJ48 1285 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CCSAPQ6IQ19 270 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 MED27Q6P2C8 311 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 JAZF1Q86VZ6 243 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 SLC43A3Q8NBI5 491 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 AHCYL2Q96HN2 611 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 SMOQ99835 787 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CHMP1AQ9HD42 196 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 THUMPD1Q9NXG2 353 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 ZNF639Q9UID6 485 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 SLC27A6Q9Y2P4 619 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 LRRC14BA6NHZ5 514 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CDK4P11802 303 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PTPN2P17706 415 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 AMD1P17707 334 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PRPS1L1P21108 318 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 EDNRBP24530 442 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 NKX2-5P52952 324 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 SLC10A7Q0GE19 358 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 GANABQ14697 944 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 PON2Q15165 354 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 FAAH2Q6GMR7 532 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MSANTD2Q6P1R3 559 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 SLC15A3Q8IY34 581 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 AIF1LQ9BQI0 150 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ASPNQ9BXN1 380 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 SMOC2Q9H3U7 446 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PCDHGA4Q9Y5G9 962 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PIRO00625 290 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CRYZL1O95825 349 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ANXA3P12429 323 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PRKACBP22694 351 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ABHD18Q0P651 414 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 C1orf220Q5T0J3 134 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ATXN7L2Q5T6C5 722 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 C1orf189Q5VU69 101 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 FAM91A1Q658Y4 838 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ZNF767PQ75MW2 155 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 IFNLR1Q8IU57 520 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 ADGRG2Q8IZP9 1017 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PIAS4Q8N2W9 510 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 ZNF548Q8NEK5 533 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 TSPEARQ8WU66 669 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 JPH3Q8WXH2 748 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 MYOCQ99972 504 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 C16orf70Q9BSU1 422 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 EQTNQ9NQ60 294 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 NUDT15Q9NV35 164 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 C14orf119Q9NWQ9 140 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MKS1Q9NXB0 559 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 CALML5Q9NZT1 146 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 SRRDQ9UH36 339 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MGAT4AQ9UM21 535 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MEMO1Q9Y316 297 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 COL2A1P02458 1487 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 FUT4P22083 530 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MAP2K3P46734 347 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 GABARAPL2P60520 117 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 UFM1P61960 85 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ADGRF1Q5T601 910 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 UBAP2Q5T6F2 1119 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 ANKRD26P1Q6NSI1 321 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms