RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 CASD1Q96PB1 797 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CLSTN3Q9BQT9 956 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 LINC00597Q9H2U6 94 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 ZNF334Q9HCZ1 680 aaPredicted RBP12.3□□□□□ -0.44
RETREG3-201ENST00000309428 C11orf16Q9NQ32 467 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 SLC13A4Q9UKG4 626 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 SNX6Q9UNH7 406 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 WNT6Q9Y6F9 365 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CACNA1IQ9P0X4 2223 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CASP8AP2Q9UKL3 1982 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 A0A1W2PQ72 361 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 ZSCAN5BA6NJL1 495 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 HSD17B1P14061 328 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CSF2RAP15509 400 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 ITIH1P19827 911 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CLK3P49761 638 aaKnown RBP12.3□□□□□ -0.44
RETREG3-201ENST00000309428 PTPN5P54829 565 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 IRF8Q02556 426 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 TBRG1Q3YBR2 411 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CYHR1Q6ZMK1 362 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 FAM83FQ8NEG4 500 aaPredicted RBP12.3□□□□□ -0.44
RETREG3-201ENST00000309428 OR13F1Q8NGS4 319 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 RHCGQ9UBD6 479 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CCL26Q9Y258 94 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 UGT2A1Q9Y4X1 527 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 TMEM221A6NGB7 291 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 HLA-EP13747 358 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 AQP6Q13520 282 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 PTCHD4Q6ZW05 846 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 CD300AQ9UGN4 299 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 ATP6V1HQ9UI12 483 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 RNF6Q9Y252 685 aa12.3□□□□□ -0.44
RETREG3-201ENST00000309428 LOC285095A0A1B0GVY8 99 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MROH6A6NGR9 719 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 UGT2B11O75310 529 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 GUCY1B2O75343 617 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 C1QCP02747 245 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 CKMT1AP12532 417 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PTNP21246 168 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 GADD45AP24522 165 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MAPKAPK2P49137 400 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 NDUFA5Q16718 116 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PLET1Q6UQ28 207 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TMPRSS11AQ6ZMR5 421 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TRAPPC5Q8IUR0 188 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 LRRC49Q8IUZ0 686 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 CNTN4Q8IWV2 1026 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 KLK6Q92876 244 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MYDGFQ969H8 173 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 OTUB1Q96FW1 271 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 SDR39U1Q9NRG7 319 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 C1orf109Q9NX04 203 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PCTPQ9UKL6 214 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 VPS9D1Q9Y2B5 631 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 OAS3Q9Y6K5 1087 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 FABP3P05413 133 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 STSP08842 583 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PFKLP17858 780 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TNNI3P19429 210 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 GSTM2P28161 218 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 KIR3DL1P43629 444 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ELAVL2Q12926 359 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ACOX1Q15067 660 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ATP13A5Q4VNC0 1218 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TRMT11Q7Z4G4 463 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 CELF2-AS1Q8N7Q2 184 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 OR8H1Q8NGG4 311 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ZNF558Q96NG5 402 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 COPS8Q99627 209 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 IL26Q9NPH9 171 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TMCC3Q9ULS5 477 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PRELID1Q9Y255 219 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 LCHNA4D1U4 455 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 NPIPB15A6NHN6 443 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MYL12BO14950 172 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 SUV39H1O43463 412 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 FHP07954 510 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MLLT10P55197 1068 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 NAE1Q13564 534 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TSTQ16762 297 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 USP39Q53GS9 565 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PYCR3Q53H96 274 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 DPY19L3Q6ZPD9 716 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 CYP4Z1Q86W10 505 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 UXS1Q8NBZ7 420 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 VANGL1Q8TAA9 524 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ZNF461Q8TAF7 563 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PHF10Q8WUB8 498 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PHOX2BQ99453 314 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 TFB2MQ9H5Q4 396 aaKnown RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 RNF167Q9H6Y7 350 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 AIG1Q9NVV5 245 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 NLE1Q9NVX2 485 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 COMMD3Q9UBI1 195 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 MBD1Q9UIS9 605 aaPredicted RBP12.29□□□□□ -0.44
RETREG3-201ENST00000309428 ZNF225Q9UK10 706 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 PIKFYVEQ9Y2I7 2098 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 SZT2Q5T011 3432 aa12.29□□□□□ -0.44
RETREG3-201ENST00000309428 FAM240BA0A1B0GVZ2 78 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms