RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ATP13A1Q9HD20 1204 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 UBQLN1Q9UMX0 589 aaKnown RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 DLGAP4Q9Y2H0 992 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 A3GALT2U3KPV4 340 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 MOXD2PA6NHM9 499 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SNTNA6NMZ2 147 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 PLK4O00444 970 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 NBNO60934 754 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 FABP3P05413 133 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 GSTM1P09488 218 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 CSF3P09919 207 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SLC9A3P48764 834 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 LIMK1P53667 647 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 AIF1P55008 147 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 FLYWCH1Q4VC44 716 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 MARC1Q5VT66 337 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 OTOP2Q7RTS6 562 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SLC51BQ86UW2 128 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 CCDC117Q8IWD4 279 aaPredicted RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 B3GNT7Q8NFL0 401 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SEMA3CQ99985 751 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 LCHNA4D1U4 455 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 GLTPD2A6NH11 291 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 GABRDO14764 452 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 NUDT7P0C024 238 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 EVI2BP34910 448 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ETV6P41212 452 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MAGEA2P43356 314 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 GZMKP49863 264 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CDH18Q13634 790 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 KYAT1Q16773 422 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ALFQ53S48 1182 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 PSAPL1Q6NUJ1 521 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 SLC27A1Q6PCB7 646 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 KLHL17Q6TDP4 642 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ATCAYQ86WG3 371 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 GPR150Q8NGU9 434 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MYDGFQ969H8 173 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 TMEM203Q969S6 136 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MSANTD3Q96H12 275 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 EXOC2Q96KP1 924 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CPPED1Q9BRF8 314 aaPredicted RBP13.07□□□□□ -0.32
SKA3-201ENST00000298260 ACAT2Q9BWD1 397 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MAGIXQ9H6Y5 334 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 REEP1Q9H902 201 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 RNF121Q9H920 327 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 NMRK2Q9NPI5 230 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 SERHLQ9NQF3 203 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 DYRK4Q9NR20 520 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MCUBQ9NWR8 336 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ZNF226Q9NYT6 803 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 HECAQ9UBI9 543 aaPredicted RBP13.07□□□□□ -0.32
SKA3-201ENST00000298260 CLEC2DQ9UHP7 191 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 SNX7Q9UNH6 387 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 RWDD3Q9Y3V2 267 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 PLA2G10O15496 165 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 AOC2O75106 756 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 OPN1SWP03999 348 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 TIE1P35590 1138 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 SUOXP51687 545 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CAV3P56539 151 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 SLC39A12Q504Y0 691 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ARTNQ5T4W7 220 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 RASAL3Q86YV0 1011 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CHST13Q8NET6 341 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 OR4K2Q8NGD2 314 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 MAL2Q969L2 176 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CDKN2AIPNLQ96HQ2 116 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 NIPSNAP1Q9BPW8 284 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 C1QTNF7Q9BXJ2 289 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 ALG5Q9Y673 324 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 CFAP20Q9Y6A4 193 aaKnown RBP13.07□□□□□ -0.32
SKA3-201ENST00000298260 HSPE1-MOB4S4R3N1 261 aa13.07□□□□□ -0.32
SKA3-201ENST00000298260 HHLA1C9JL84 531 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 E9PAM4 449 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 TRIM77I1YAP6 450 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ARHGEF9O43307 516 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 NDUFS3O75489 264 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 OR7A10O76100 309 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 F9P00740 461 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 TP53P04637 393 aaPredicted RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 ICAM2P13598 275 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GPC1P35052 558 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 OR1E2P47887 323 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 MRPL19P49406 292 aaKnown RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 KCNQ1P51787 676 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GRIK4Q16099 956 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.06□□□□□ -0.32
SKA3-201ENST00000298260 SAXO2Q658L1 398 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ALKAL1Q6UXT8 129 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ADAMTSL2Q86TH1 951 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 OR8H3Q8N146 312 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 RNF175Q8N4F7 328 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 SLC5A8Q8N695 610 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 WDR36Q8NI36 951 aaKnown RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 FCGR1BQ92637 280 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 REPS1Q96D71 796 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 PGAP3Q96FM1 320 aaPredicted RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 SLC39A13Q96H72 371 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 HRASLS5Q96KN8 279 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms