RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 FBXL3Q9UKT7 428 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 GBX2P52951 348 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ANKDD1AQ495B1 522 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 KIAA1161Q6NSJ0 714 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 YIPF7Q8N8F6 280 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 OR2AJ1Q8NGZ0 328 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 STYXQ8WUJ0 223 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 STON2Q8WXE9 905 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 OAZ3Q9UMX2 235 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TCAF2A6NFQ2 919 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 IQCF5A8MTL0 148 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 BCAS2O75934 225 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MTPNP58546 118 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PAOXQ6QHF9 649 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 LRRN1Q6UXK5 716 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ASRGL1Q7L266 308 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SIAH1Q8IUQ4 282 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 DCBLD1Q8N8Z6 715 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TCEAL3Q969E4 200 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SPATA7Q9P0W8 599 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PLATP00750 562 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TACSTD2P09758 323 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 HK1P19367 917 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 FUT4P22083 530 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 DAOAP59103 153 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SP2Q02086 613 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 CLEC20AQ6ZU45 233 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ANKRD23Q86SG2 305 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ELMOD2Q8IZ81 293 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PQLC3Q8N755 202 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 FAM156AQ8NDB6 213 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MFSD8Q8NHS3 518 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 RHBDF1Q96CC6 855 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PEBP4Q96S96 227 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ZBTB26Q9HCK0 441 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 EI24O14681 340 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 FKBP1BP68106 108 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 E2F1Q01094 437 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MAP1SQ66K74 1059 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 HIST1H2AAQ96QV6 131 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 C12orf71A8MTZ7 269 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 STMND1H3BQB6 276 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MYCLP1P12525 358 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SERPINA13PQ6UXR4 307 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 CHERPQ8IWX8 916 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TBCCD1Q9NVR7 557 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PQBP1O60828 265 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ITGA10O75578 1167 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ANXA4P09525 319 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 LMO2P25791 158 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 S100PP25815 95 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 AVPR1BP47901 424 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 CLDN10P78369 228 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PROKR2Q8NFJ6 384 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 COPS8Q99627 209 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MFSD1Q9H3U5 465 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TVP23BQ9NYZ1 205 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF510Q9Y2H8 683 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHGB1Q9Y5G3 927 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PHIPQ8WWQ0 1821 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MASP1P48740 699 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 GANABQ14697 944 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TBRG1Q3YBR2 411 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SPATA22Q8NHS9 363 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 STRA6Q9BX79 667 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 DNAJC5Q9H3Z4 198 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 AQP12BA6NM10 295 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 C1QTNF3-AMACRE9PGA6 284 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 MTHFD1P11586 935 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CDH1P12830 882 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PBX3P40426 434 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CLCNKBP51801 687 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 C2orf80Q0P641 193 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 NPTX1Q15818 432 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TBC1D25Q3MII6 688 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 C1orf220Q5T0J3 134 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 FAM129CQ86XR2 697 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 AQP12AQ8IXF9 295 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 AZIN2Q96A70 460 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TWNKQ96RR1 684 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SAV1Q9H4B6 383 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ASAH2Q9NR71 780 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IMP3Q9NV31 184 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CMAHPQ9Y471 501 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 DICER1Q9UPY3 1922 aaKnown RBP9.61□□□□□ -0.87
COL6A3-201ENST00000295550 RENP00797 406 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF823P16415 610 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SSTP61278 116 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 DSC2Q02487 901 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 KCTD9Q7L273 389 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TAS1R3Q7RTX0 852 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IQCHQ86VS3 1027 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 SNX29P2Q8IUI4 249 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 IGDCC3Q8IVU1 814 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PIGVQ9NUD9 493 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 C1orf196B1AJZ1 125 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 PIP5K1BO14986 540 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 CD52P31358 61 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 GAD2Q05329 585 aa9.61□□□□□ -0.87
COL6A3-201ENST00000295550 TAF1AQ15573 450 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms