RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 GNB5O14775 395 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CDH1P12830 882 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PFKLP17858 780 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ARL2P36404 184 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 LIMK2P53671 638 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CRISP1P54107 249 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SPATS1Q496A3 300 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 RPL13AP3Q6NVV1 102 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 OR5T2Q8NGG2 359 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PIWIL1Q96J94 861 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 COMMD3Q9UBI1 195 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 GRHPRQ9UBQ7 328 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FZD10Q9ULW2 581 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 DNMT3AQ9Y6K1 912 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 CAPN8A6NHC0 703 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TRIM64CA6NLI5 447 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 A8MUA0 341 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 RPL10P27635 214 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 CDKN1CP49918 316 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 S100A10P60903 97 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SLC10A7Q0GE19 358 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 LPCAT4Q643R3 524 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 HAS1Q92839 578 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 C16orf58Q96GQ5 468 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 DUSP26Q9BV47 211 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 YTHDF1Q9BYJ9 559 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 FN3KQ9H479 309 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SCP2D1Q9UJQ7 156 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TRBV23OR9-2A0A075B6M9 112 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TEX13DA0A0J9YY54 714 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 B8ZZF3 427 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ATG12O94817 140 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ADH5P11766 374 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ZNF30P17039 623 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PRMT2P55345 433 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TUBA1BP68363 451 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 MLC1Q15049 377 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 DHCR24Q15392 516 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TUBA1AQ71U36 451 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CBR4Q8N4T8 237 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 THAP6Q8TBB0 222 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 METTL7AQ9H8H3 244 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SH3PXD2BA1X283 911 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CLRN1P58418 232 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SEMA3AQ14563 771 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CDKL4Q5MAI5 379 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 VARS2Q5ST30 1063 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 LRRC20Q8TCA0 184 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 G6PC3Q9BUM1 346 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 SLCO1B3Q9NPD5 702 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 GIN1Q9NXP7 522 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FETUBQ9UGM5 382 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 EIF2B4Q9UI10 523 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 DOPEY1Q5JWR5 2465 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 MEGF6O75095 1541 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 AHSA1O95433 338 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 S1PR1P21453 382 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 EEFSECP57772 596 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 DSTNP60981 165 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 GPR153Q6NV75 609 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 MYO18BQ8IUG5 2567 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ADAD1Q96M93 576 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 CCRL2O00421 344 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PRAMEF14Q5SWL7 426 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PRAMEF13Q5VWM6 474 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TMEM156Q8N614 296 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 OR2AG1Q9H205 316 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 CEP170BQ9Y4F5 1589 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 SH3D21A4FU49 640 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 PER3P56645 1201 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 NFATC2Q13469 925 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 FAM86B1Q8N7N1 296 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 KLRG1Q96E93 195 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 MAPKAP1Q9BPZ7 522 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 SLC2A11Q9BYW1 496 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 SNTG1Q9NSN8 517 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 ZIM2Q9NZV7 527 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 CBSLP0DN79 551 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 ZNF16P17020 682 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 CBSP35520 551 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 WASP42768 502 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 CMTM7Q96FZ5 175 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 FBXL12Q9NXK8 326 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 A0A1W2PRB8 838 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 PLP2Q04941 152 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 PTPN20Q4JDL3 420 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 DNAJC19Q96DA6 116 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 TMEM175Q9BSA9 504 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 WDR55Q9H6Y2 383 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 MYNNQ9NPC7 610 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 OTOFQ9HC10 1997 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 ZNF99A8MXY4 864 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 GRIA1P42261 906 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 C10orf62Q5T681 223 aaPredicted RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 PURBQ96QR8 312 aaKnown RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 CPXM1Q96SM3 734 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 EFCAB11Q9BUY7 163 aa9.09□□□□□ -0.95
CUX1-201ENST00000292535 GTPBP2Q9BX10 602 aaKnown RBP9.09□□□□□ -0.95
CUX1-201ENST00000292535 SEC61A2Q9H9S3 476 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms