RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 OPTCQ9UBM4 332 aa10.03□□□□□ -0.8
UPF3B-201ENST00000276201 NDRG4Q9ULP0 352 aaKnown RBP10.03□□□□□ -0.8
UPF3B-201ENST00000276201 NDRG2Q9UN36 371 aaKnown RBP10.03□□□□□ -0.8
UPF3B-201ENST00000276201 MAN2B2Q9Y2E5 1009 aa10.03□□□□□ -0.8
UPF3B-201ENST00000276201 PCDHB14Q9Y5E9 798 aa10.03□□□□□ -0.8
UPF3B-201ENST00000276201 TNPO3Q9Y5L0 923 aaKnown RBP10.03□□□□□ -0.8
UPF3B-201ENST00000276201 MUC6Q6W4X9 2439 aa10.03□□□□□ -0.8
UPF3B-201ENST00000276201 IGLV3-10A0A075B6K4 115 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 GNGT2O14610 69 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 TOR1BO14657 336 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 NOBOXO60393 691 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 RHOBTB1O94844 696 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 NFATC1O95644 943 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 IL6P05231 212 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 HMBSP08397 361 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SERPINF2P08697 491 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 GJA4P35212 333 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 IHHQ14623 411 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SF3B4Q15427 424 aaKnown RBP eCLIP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 GAB4Q2WGN9 574 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 CATSPEREQ5SY80 951 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 LRIF1Q5T3J3 769 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 METTL2BQ6P1Q9 378 aaKnown RBP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 PAQR3Q6TCH7 311 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 AFTPHQ6ULP2 937 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 Q6ZNB5 142 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 USP43Q70EL4 1123 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 PAGE2Q7Z2X7 111 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SNX20Q7Z614 316 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 TMEM179BQ7Z7N9 219 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 LDB1Q86U70 411 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 PLD3Q8IV08 490 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 ADGRG2Q8IZP9 1017 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SLC7A5P1Q8MH63 180 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 RYBPQ8N488 228 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 FAM86B1Q8N7N1 296 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 TP53INP1Q96A56 240 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SIK2Q9H0K1 926 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 NDFIP2Q9NV92 336 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 VAPAQ9P0L0 249 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 TBC1D14Q9P2M4 693 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 MRPS17Q9Y2R5 130 aaKnown RBP10.02□□□□□ -0.8
UPF3B-201ENST00000276201 CCL27Q9Y4X3 112 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 NOX1Q9Y5S8 564 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 HS3ST4Q9Y661 456 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 AP1M2Q9Y6Q5 423 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 V9GYQ6 96 aa10.02□□□□□ -0.8
UPF3B-201ENST00000276201 SLC12A8A0AV02 714 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 OR51F1A6NGY5 319 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 PTGES3LE9PB15 166 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 HAT1O14929 419 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 SEC22BO75396 215 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 ERN1O75460 977 aaKnown RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 CREG1O75629 220 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 WDR47O94967 919 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 KCNK2O95069 426 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 TSPAN12O95859 305 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 MT-ND2P03891 347 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 KLKB1P03952 638 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 PCNAP12004 261 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 IGFBP5P24593 272 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 PRDX3P30048 256 aaKnown RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 PXNP49023 591 aaPredicted RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 CLK3P49761 638 aaKnown RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 LIMK1P53667 647 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 VBP1P61758 197 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 IL5RAQ01344 420 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 DSC2Q02487 901 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 GBX1Q14549 363 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 MAD2L1BPQ15013 274 aaPredicted RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 DHCR24Q15392 516 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 TSNQ15631 228 aaKnown RBP10.02□□□□□ -0.81
UPF3B-201ENST00000276201 RBBP7Q16576 425 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 CPZQ66K79 652 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 FIG4Q92562 907 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 FAM162AQ96A26 154 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 CLDN23Q96B33 292 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 ZHX1-C8orf76Q96EF9 292 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 PYURFQ96I23 114 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 NELL2Q99435 816 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 SIAEQ9HAT2 523 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 IKZF3Q9UKT9 509 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 GRIP1Q9Y3R0 1128 aa10.02□□□□□ -0.81
UPF3B-201ENST00000276201 ANKRD34BA5PLL1 514 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 EFCAB9A8MZ26 197 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 MUSKO15146 869 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 SCO2O43819 266 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 DFNA5O60443 496 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 TRAPPC2P0DI81 140 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 TRAPPC2BP0DI82 140 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 HOXB9P17482 250 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-201ENST00000276201 COL9A1P20849 921 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 NR4A1P22736 598 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 CASP2P42575 452 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 ZNF140P52738 457 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-201ENST00000276201 ERVPABLB-1P60509 514 aa10.01□□□□□ -0.81
UPF3B-201ENST00000276201 TBCEQ15813 527 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-201ENST00000276201 TTLL9Q3SXZ7 439 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms