RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NT5DC2Q9H857 520 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 NDE1Q9NXR1 346 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 APOBEC3BQ9UH17 382 aaKnown RBP13.59□□□□□ -0.23
SS18-201ENST00000269137 VCANP13611 3396 aa13.58□□□□□ -0.23
SS18-201ENST00000269137 BBIP1A8MTZ0 92 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 MAGEB17A8MXT2 336 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 NRP2O60462 931 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 JAK1P23458 1154 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 NME5P56597 212 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 UFM1P61960 85 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 UBE2IP63279 158 aaKnown RBP13.58□□□□□ -0.24
SS18-201ENST00000269137 ABATP80404 500 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 RCAN2Q14206 197 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 COQ5Q5HYK3 327 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 TMIGD1Q6UXZ0 262 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 WDR5BQ86VZ2 330 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 AMIGO1Q86WK6 493 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 FAM9CQ8IZT9 166 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 PROKR1Q8TCW9 393 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 MCUR1Q96AQ8 359 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 NECAB3Q96P71 396 aaPredicted RBP13.58□□□□□ -0.24
SS18-201ENST00000269137 AIF1LQ9BQI0 150 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 LRRC61Q9BV99 259 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 MRPL1Q9BYD6 325 aaKnown RBP13.58□□□□□ -0.24
SS18-201ENST00000269137 RHBGQ9H310 441 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 ACTL8Q9H568 366 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 CAAP1Q9H8G2 361 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 SLC52A3Q9NQ40 469 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 POT1Q9NUX5 634 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 ADGRE2Q9UHX3 823 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 POLR3HQ9Y535 204 aaPredicted RBP13.58□□□□□ -0.24
SS18-201ENST00000269137 SDK1Q7Z5N4 2213 aa13.58□□□□□ -0.24
SS18-201ENST00000269137 DYTNA2CJ06 578 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 FAM234BA2RU67 622 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 FBP2O00757 339 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 VILLO15195 856 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 CELA2BP08218 269 aaPredicted RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 PRPS2P11908 318 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 PCNAP12004 261 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 BCKDHAP12694 445 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 AMD1P17707 334 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 PSMB5P28074 263 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 MAPK1P28482 360 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 PGM1P36871 562 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ZFP36L2P47974 494 aaKnown RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 FNTBP49356 437 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 NUDT2P50583 147 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 NXPH1P58417 271 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 YBX1P67809 324 aaKnown RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 DDX39BQ13838 428 aaKnown RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 PRRT3Q5FWE3 981 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 C16orf89Q6UX73 402 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 DSELQ8IZU8 1212 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 C11orf24Q96F05 449 aaPredicted RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 TEX37Q96LM6 180 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 SPNS1Q9H2V7 528 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 CUEDC1Q9NWM3 386 aaPredicted RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 NMRK1Q9NWW6 199 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 CPNE7Q9UBL6 633 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 NDUFAF1Q9Y375 327 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 THADAQ6YHU6 1953 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 TRBV23OR9-2A0A075B6M9 112 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 NR5A2O00482 541 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 CCNDBP1O95273 360 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 VIPP01282 170 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 CHRM5P08912 532 aaPredicted RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 SERPINB1P30740 379 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ELF3P78545 371 aaPredicted RBP13.57□□□□□ -0.24
SS18-201ENST00000269137 REEP5Q00765 189 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ART3Q13508 389 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ELOCQ15369 112 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 MMEL1Q495T6 779 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ADNP2Q6IQ32 1131 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 TSSK4Q6SA08 328 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 LAYNQ6UX15 382 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 HACD2Q6Y1H2 254 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 TRIM48Q8IWZ4 208 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 LIX1Q8N485 282 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 RNF175Q8N4F7 328 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 ZNF740Q8NDX6 193 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 OR4E2Q8NGC2 313 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 APIPQ96GX9 242 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 DMRT3Q9NQL9 472 aa13.57□□□□□ -0.24
SS18-201ENST00000269137 A0A1W2PP18 115 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 H7BY64 318 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 BCAT2O15382 392 aaPredicted RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 LAMTOR5O43504 91 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 CAPN3P20807 821 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 HRH2P25021 359 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 IL12AP29459 219 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 PEBP1P30086 187 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 AFF3P51826 1226 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 RAP1GDS1P52306 607 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 POLR2JP52435 117 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 KCNK10P57789 538 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 RPS13P62277 151 aaKnown RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 CSNK1G2P78368 415 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 PHEXP78562 749 aa13.56□□□□□ -0.24
SS18-201ENST00000269137 MEF2AQ02078 507 aaPredicted RBP13.56□□□□□ -0.24
SS18-201ENST00000269137 TBL3Q12788 808 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms