RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 DAPL1A0PJW8 107 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FAAHO00519 579 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NME6O75414 186 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ALDH1A1P00352 501 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LINC00032P0C843 101 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TYMPP19971 482 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PITPNBP48739 271 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 YBEYP58557 167 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF227Q86WZ6 799 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR4F6Q8NGB9 312 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR2T35Q8NGX2 323 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR4L1Q8NH43 312 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LHPPQ9H008 270 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LMAN2LQ9H0V9 348 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 A0A1B0GVG6 124 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ISM1B1AKI9 464 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 H3BUI4 141 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SEC14L5O43304 696 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SERPIND1P05546 499 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TLX1P31314 330 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OGDHQ02218 1023 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TWF1Q12792 350 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ELAVL2Q12926 359 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2H2Q13888 395 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 IRF4Q15306 451 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CD276Q5ZPR3 534 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2H2CQ6P1K8 395 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LGI4Q8N135 537 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PHYHIPQ92561 330 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PIGKQ92643 395 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SGK3Q96BR1 496 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PPM1MQ96MI6 270 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SMCO4Q9NRQ5 59 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PPLO60437 1756 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 B4GALT4O60513 344 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TLR5O60602 858 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NR2F1P10589 423 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PKMP14618 531 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 L1CAMP32004 1257 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PTGER3P43115 390 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 E2F1Q01094 437 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LARS2Q15031 903 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NKX1-1Q15270 411 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ARHGAP11AQ6P4F7 1023 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ULK3Q6PHR2 472 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SSX6Q7RTT6 188 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TPRA1Q86W33 373 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SPATA22Q8NHS9 363 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TAAR8Q969N4 342 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF341Q9BYN7 854 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FLRT1Q9NZU1 646 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CLTCQ00610 1675 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 H7C4K7 107 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FGF3P11487 239 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MAGP20916 626 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KHKP50053 298 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ST3GAL4Q11206 333 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 COL13A1Q5TAT6 717 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 BRSK1Q8TDC3 778 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FCAMRQ8WWV6 532 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 WACQ9BTA9 647 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MARK1Q9P0L2 795 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GMEB2Q9UKD1 530 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF214Q9UL59 606 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KIAA0513O60268 411 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CD1EP15812 388 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FMO4P31512 558 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CEACAM7Q14002 265 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 NTRK2Q16620 822 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MEP1AQ16819 746 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ALG11Q2TAA5 492 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HECTD2Q5U5R9 776 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 DCAF12L1Q5VU92 463 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PRSS55Q6UWB4 352 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SCN4BQ8IWT1 228 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GPR65Q8IYL9 337 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PHTF2Q8N3S3 785 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CMASQ8NFW8 434 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 OR56B4Q8NH76 319 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MRPS31Q92665 395 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RTP4Q96DX8 246 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FCRL3Q96P31 734 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HHATLQ9HCP6 504 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 INTS7Q9NVH2 962 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GPATCH2Q9NW75 528 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 POLHQ9Y253 713 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 URADA6NGE7 173 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 NKRFO15226 690 aaKnown RBP eCLIP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RAD1O60671 282 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CREG1O75629 220 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CBSLP0DN79 551 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CD247P20963 164 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CRHBPP24387 322 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CBSP35520 551 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RPS14P62263 151 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ACTA2P62736 377 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ACTG2P63267 376 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KLF1Q13351 362 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF169Q14929 603 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GALNT5Q7Z7M9 940 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms