RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RNF44Q7L0R7 432 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 CSNK1A1LQ8N752 337 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 FAM136AQ96C01 138 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 FOPNLQ96NB1 174 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 DPH7Q9BTV6 452 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 TRIM8Q9BZR9 551 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 CATSPERZQ9NTU4 200 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 C14orf105Q9NVL8 296 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 CDC14AQ9UNH5 594 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 DCHS2Q6V1P9 2916 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 OR5H15A6NDH6 313 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 PRICKLE3O43900 615 aaPredicted RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 SLC19A2O60779 497 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 VPS26AO75436 327 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 FKBP9O95302 570 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 C1orf105O95561 183 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 MYBL2P10244 700 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 GRIA1P42261 906 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 EIF3BP55884 814 aaKnown RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 ADORA2A-AS1P86434 159 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 MAT1AQ00266 395 aaKnown RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 DSG2Q14126 1118 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 LONRF1Q17RB8 773 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 HKDC1Q2TB90 917 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 AARS2Q5JTZ9 985 aaKnown RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 FCRLBQ6BAA4 426 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 SUSD1Q6UWL2 747 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 OTOAQ7RTW8 1153 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 ADCK2Q7Z695 626 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 DNAJB8Q8NHS0 232 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 PANX3Q96QZ0 392 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 MRPS30Q9NP92 439 aaKnown RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 KLHL1Q9NR64 748 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 MARCH4Q9P2E8 410 aaPredicted RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 GNPTGQ9UJJ9 305 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 MKL2Q9ULH7 1088 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 PACSIN2Q9UNF0 486 aaPredicted RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 RUVBL1Q9Y265 456 aaKnown RBP14.26□□□□□ -0.13
SYNE2-228ENST00000639659 DUSP10Q9Y6W6 482 aa14.26□□□□□ -0.13
SYNE2-228ENST00000639659 A0A0A6YYC8 382 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 IGHV3-20A0A0C4DH32 117 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 A0A0U1RQJ8 604 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 RCCD1A6NED2 376 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 C19orf84I3L1E1 186 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 I3L1I5 382 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 PRMT5O14744 637 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 WISP2O76076 250 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 SEC24DO94855 1032 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 SLCO2B1O94956 709 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 IFNB1P01574 187 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 STATHP02808 62 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ADRA1DP25100 572 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 RPA3P35244 121 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 SMSP52788 366 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 PCOLCEQ15113 449 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ZNF766Q5HY98 468 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 XKRXQ6PP77 449 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 RIPOR1Q6ZS17 1223 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 NCCRP1Q6ZVX7 275 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 PPHLN1Q8NEY8 458 aaKnown RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 OR2A1Q8NGT9 310 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ATG4AQ8WYN0 398 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 RERGQ96A58 199 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ETNK1Q9HBU6 452 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 ANKRD10Q9NXR5 420 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 STMN3Q9NZ72 180 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 TEKT2Q9UIF3 430 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 TCAF1Q9Y4C2 921 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 PCNX1Q96RV3 2341 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 TACC2O95359 2948 aa14.25□□□□□ -0.13
SYNE2-228ENST00000639659 CCDC168Q8NDH2 2452 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 IGLV3-12A0A075B6K2 115 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 A0A1W2PPV9 198 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 OR2A25A4D2G3 310 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 NDUFS3O75489 264 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 IPO7O95373 1038 aaKnown RBP14.24□□□□□ -0.13
SYNE2-228ENST00000639659 C8orf89P0DMQ9 161 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 PSMA3P25788 255 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 AP2B1P63010 937 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 PRTGQ2VWP7 1150 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 BTBD16Q32M84 506 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MINDY4Q4G0A6 757 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 LRRC8BQ6P9F7 803 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 CEP97Q8IW35 865 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 AMER3Q8N944 861 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 TC2NQ8N9U0 490 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MAGEC3Q8TD91 643 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 METTL21AQ8WXB1 218 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MTFMTQ96DP5 389 aaKnown RBP14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MRFAP1L1Q96HT8 127 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 ZNF700Q9H0M5 742 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MKKSQ9NPJ1 570 aaPredicted RBP14.24□□□□□ -0.13
SYNE2-228ENST00000639659 TAC3Q9UHF0 121 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 PCYOX1Q9UHG3 505 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 MRFAP1Q9Y605 127 aa14.24□□□□□ -0.13
SYNE2-228ENST00000639659 TCRBV7S2A1N4TA0A589 114 aa14.23□□□□□ -0.13
SYNE2-228ENST00000639659 SOWAHDA6NJG2 315 aa14.23□□□□□ -0.13
SYNE2-228ENST00000639659 CD3EAPO15446 510 aaKnown RBP14.23□□□□□ -0.13
SYNE2-228ENST00000639659 ZNHIT1O43257 154 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms