RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 STAT2P52630 851 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 ITGA7Q13683 1181 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 C15orf59Q2T9L4 293 aaPredicted RBP3.21□□□□□ -1.9
CD44-239ENST00000639002 CBWD6Q4V339 395 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 CBWD3Q5JTY5 395 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 PRR27Q6MZM9 219 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 MFSD12Q6NUT3 480 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 ZNF841Q6ZN19 808 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 CEACAM19Q7Z692 300 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 MINDY1Q8N5J2 469 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 KLHDC1Q8N7A1 406 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 OR4K1Q8NGD4 311 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 CFAP61Q8NHU2 1237 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 C9orf43Q8TAL5 461 aaPredicted RBP3.21□□□□□ -1.9
CD44-239ENST00000639002 TOMM40LQ969M1 308 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 NXNL1Q96CM4 212 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 LGMNQ99538 433 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 MTMR12Q9C0I1 747 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 CHST11Q9NPF2 352 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 STYXL1Q9Y6J8 313 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 ITIH6Q6UXX5 1313 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 A0A1W2PPK0 400 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 TLX2O43763 284 aaPredicted RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 POP4O95707 220 aaKnown RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 CSH1P0DML2 217 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 CSH2P0DML3 217 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 CAPGP40121 348 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 VAMP7P51809 220 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 KLC1Q07866 573 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 VEZF1Q14119 521 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 PHKG1Q16816 387 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 SPECC1Q5M775 1068 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 FAM205BPQ63HN1 556 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 KRTAP5-5Q701N2 237 aaPredicted RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 TIPARPQ7Z3E1 657 aaKnown RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 SLC25A42Q86VD7 318 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 PHC2Q8IXK0 858 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 MCUQ8NE86 351 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 NPRL2Q8WTW4 380 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 TMCO6Q96DC7 493 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 FAM71F1Q96KD3 344 aaPredicted RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 TREX2Q9BQ50 279 aaPredicted RBP3.2□□□□□ -1.9
CD44-239ENST00000639002 NYXQ9GZU5 481 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 GON4LQ3T8J9 2241 aa3.2□□□□□ -1.9
CD44-239ENST00000639002 RALGAPA1Q6GYQ0 2036 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 K7EQD1 137 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 GPRIN2O60269 458 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 GALR3O60755 368 aaPredicted RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 NXPH4O95158 308 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 ATP1B1P05026 303 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 PRG2P13727 222 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 PFKFB1P16118 471 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 SELEP16581 610 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 MYL7Q01449 175 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 BAATQ14032 418 aaPredicted RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 EIPR1Q53HC9 387 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 GARNL3Q5VVW2 1013 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 LCLAT1Q6UWP7 414 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 KRTAP11-1Q8IUC1 163 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 TYMSOSQ8TAI1 123 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 NSUN4Q96CB9 384 aaKnown RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 TEX12Q9BXU0 123 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 ZMYND12Q9H0C1 365 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 HAUS2Q9NVX0 235 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 TBC1D29Q9UFV1 150 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 ZNF107Q9UII5 783 aaPredicted RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 RNF150Q9ULK6 438 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 CHKBQ9Y259 395 aa3.19□□□□□ -1.9
CD44-239ENST00000639002 KLF2Q9Y5W3 355 aaPredicted RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 COL16A1Q07092 1604 aaPredicted RBP3.19□□□□□ -1.9
CD44-239ENST00000639002 TRBV4-1A0A0J9YWV2 114 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ZNF840PA6NDX5 716 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 GLTPD2A6NH11 291 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 CASTOR2A6NHX0 329 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 C2CD4DB7Z1M9 353 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 CCL24O00175 119 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 PTGESO14684 152 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 RAB40ALP0C0E4 278 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 PRKAR1AP10644 381 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ELAVL4P26378 380 aaKnown RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 PIK3R1P27986 724 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 OXTRP30559 389 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ALDH3A2P51648 485 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 PRELPP51888 382 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 EPS8Q12929 822 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 SNAPC1Q16533 368 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ZER1Q7Z7L7 766 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 RPAP2Q8IXW5 612 aaPredicted RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 OR5T2Q8NGG2 359 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 PIK3R3Q92569 461 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ZNF830Q96NB3 372 aaPredicted RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 BARD1Q99728 777 aaKnown RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 MTHFD2LQ9H903 347 aaPredicted RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 GPN1Q9HCN4 374 aaPredicted RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 ABCB10Q9NRK6 738 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 GIMAP4Q9NUV9 329 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 ADD3Q9UEY8 706 aaKnown RBP3.18□□□□□ -1.9
CD44-239ENST00000639002 PRDM4Q9UKN5 801 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 TSPAN16Q9UKR8 245 aa3.18□□□□□ -1.9
CD44-239ENST00000639002 IGLV4-3A0A075B6K6 122 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms