RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 MRPS30Q9NP92 439 aaKnown RBP17.6■□□□□ 0.41
CLN6-220ENST00000637450 C3orf18Q9UK00 162 aa17.6■□□□□ 0.41
CLN6-220ENST00000637450 ITPR2Q14571 2701 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 IGKV1-8A0A0C4DH67 115 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 PHF2O75151 1096 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 ERVK-10P10266 1014 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 ACPPP15309 386 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 FBLP22087 321 aaKnown RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 RPA3P35244 121 aaPredicted RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 HSD17B2P37059 387 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 CLCN7P51798 805 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 TERF1P54274 439 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 SARNPP82979 210 aaKnown RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 PRDX1Q06830 199 aaKnown RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 ZNF169Q14929 603 aaPredicted RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 TRIP13Q15645 432 aaPredicted RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 VWA2Q5GFL6 755 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 B3GNTL1Q67FW5 361 aaPredicted RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 ISLR2Q6UXK2 745 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 LAPTM4BQ86VI4 370 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 CAND1Q86VP6 1230 aaKnown RBP17.59■□□□□ 0.41
CLN6-220ENST00000637450 PAQR7Q86WK9 346 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 PRSS58Q8IYP2 241 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 CABS1Q96KC9 395 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 PKP4Q99569 1192 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 SYNPO2LQ9H987 977 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 ZNF160Q9HCG1 818 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 FAM114A2Q9NRY5 505 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 CDC14AQ9UNH5 594 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 VPS9D1Q9Y2B5 631 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 PCM1Q15154 2024 aa17.59■□□□□ 0.41
CLN6-220ENST00000637450 DOCK10Q96BY6 2186 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 MAGEB16A2A368 324 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 E5RI56 91 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 MAP2K7O14733 419 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 VPS26AO75436 327 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 KLHL18O94889 574 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 CATP04040 527 aaKnown RBP17.58■□□□□ 0.4
CLN6-220ENST00000637450 CCDC175P0C221 793 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 PAMP19021 973 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 COL8A1P27658 744 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 CXCR5P32302 372 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 PNLIPRP1P54315 467 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 CDC16Q13042 620 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 MFAP5Q13361 173 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 TLR1Q15399 786 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 NEK10Q6ZWH5 1172 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 NDUFAF7Q7L592 441 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 REXO1L1PQ8IX06 675 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 TRIM58Q8NG06 486 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 GRHL3Q8TE85 626 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 C8orf44Q96CB5 159 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 MVB12AQ96EY5 273 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 CNDP1Q96KN2 507 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 OR2A5Q96R48 311 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 SLC30A3Q99726 388 aa17.58■□□□□ 0.4
CLN6-220ENST00000637450 TRIM56Q9BRZ2 755 aaKnown RBP17.58■□□□□ 0.4
CLN6-220ENST00000637450 INTS10Q9NVR2 710 aaKnown RBP17.58■□□□□ 0.4
CLN6-220ENST00000637450 MDC1Q14676 2089 aaKnown RBP17.57■□□□□ 0.4
CLN6-220ENST00000637450 CELSR2Q9HCU4 2923 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 FAM237BA0A1B0GVD1 139 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 ZNF839A8K0R7 811 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 USP1O94782 785 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 EMP2P54851 167 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 RELAQ04206 551 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 GPS1Q13098 491 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 DSG2Q14126 1118 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 DHX34Q14147 1143 aaKnown RBP17.57■□□□□ 0.4
CLN6-220ENST00000637450 HKDC1Q2TB90 917 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 ANKRD22Q5VYY1 191 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 ICE2Q659A1 982 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 ZNF425Q6IV72 752 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 CASC4Q6P4E1 433 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 LINC00696Q6ZRV3 163 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 KBTBD2Q8IY47 623 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 CSNK1A1LQ8N752 337 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 FBXO15Q8NCQ5 510 aaPredicted RBP17.57■□□□□ 0.4
CLN6-220ENST00000637450 ZNF480Q8WV37 535 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 FAR1Q8WVX9 515 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 KLHL42Q9P2K6 505 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 TAC3Q9UHF0 121 aa17.57■□□□□ 0.4
CLN6-220ENST00000637450 RUVBL1Q9Y265 456 aaKnown RBP17.57■□□□□ 0.4
CLN6-220ENST00000637450 NSG1A0A0A6YYJ2 146 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 A0A1W2PQ72 361 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 SDR42E2A6NKP2 422 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 E7ENX8 843 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 E2F3O00716 465 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 PRPF4O43172 522 aaKnown RBP eCLIP17.56■□□□□ 0.42e-7■■■■■ 31.7
CLN6-220ENST00000637450 SLC16A8O95907 504 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 KRT14P02533 472 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 COX6A1P12074 109 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 MLNP12872 115 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 EDN3P14138 238 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 SLC26A3P40879 764 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 VPS41P49754 854 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 TAP2Q03519 686 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 TSTA3Q13630 321 aaPredicted RBP17.56■□□□□ 0.4
CLN6-220ENST00000637450 GARNL3Q5VVW2 1013 aa17.56■□□□□ 0.4
CLN6-220ENST00000637450 RPUSD3Q6P087 351 aaKnown RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms