RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CTSFQ9UBX1 484 aa6□□□□□ -1.45
CUX1-220ENST00000607092 EDARQ9UNE0 448 aa6□□□□□ -1.45
CUX1-220ENST00000607092 PCDHA3Q9Y5H8 950 aa6□□□□□ -1.45
CUX1-220ENST00000607092 NSD1Q96L73 2696 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 IGHV1-45A0A0A0MS14 117 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 MROH6A6NGR9 719 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 PRMT5O14744 637 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 HCRTR1O43613 425 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 MFAP3LO75121 409 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 GPC4O75487 556 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 KLHL18O94889 574 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 SLCO2B1O94956 709 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 COX6A1P12074 109 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 IL10P22301 178 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 HRH2P25021 359 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 ADRA1DP25100 572 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 ATP5DP30049 168 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 STIP1P31948 543 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 CTNNA1P35221 906 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 CYLC1P35663 651 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 GRIA3P42263 894 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 OR1D4P47884 311 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 AVPR1BP47901 424 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 AGTR2P50052 363 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 KCNK10P57789 538 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 SKP1P63208 163 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 ABATP80404 500 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 SRSF11Q05519 484 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 MSLNQ13421 630 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 ARHGAP19Q14CB8 494 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 BRD3Q15059 726 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 RNF187Q5TA31 235 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 KCTD11Q693B1 232 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 FAAH2Q6GMR7 532 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 PTRHD1Q6GMV3 140 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 HIBCHQ6NVY1 386 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 COX15Q7KZN9 410 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 RNF44Q7L0R7 432 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 OTOAQ7RTW8 1153 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 CDH24Q86UP0 819 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 CEP97Q8IW35 865 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 CCDC170Q8IYT3 715 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 LGI4Q8N135 537 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 UBL4BQ8N7F7 174 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 GPATCH11Q8N954 259 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 LINC01555Q8NAE3 123 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 CATSPER1Q8NEC5 780 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 OR6P1Q8NGX9 317 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 OR4L1Q8NH43 312 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 BRIX1Q8TDN6 353 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 PHF10Q8WUB8 498 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 NAT14Q8WUY8 206 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 SKA2Q8WVK7 121 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 RERGQ96A58 199 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 OCSTAMPQ9BR26 566 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 UTP23Q9BRU9 249 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 YIPF2Q9BWQ6 316 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 FRMD8P1Q9BZ68 369 aaPredicted RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 ZNF700Q9H0M5 742 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 ZC3H7BQ9UGR2 993 aaKnown RBP5.99□□□□□ -1.45
CUX1-220ENST00000607092 GNPTGQ9UJJ9 305 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 CSAG2Q9Y5P2 127 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 ABCA4P78363 2273 aa5.99□□□□□ -1.45
CUX1-220ENST00000607092 NUP210LQ5VU65 1888 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 JMJD1CQ15652 2540 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 ACANP16112 2415 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CROCCQ5TZA2 2017 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 STAB1Q9NY15 2570 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 FBN3Q75N90 2809 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 LOC102723996A0A087X1L8 192 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SYCE3A1L190 88 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CCDC162PA2VCL2 907 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 OR2A25A4D2G3 310 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MIF4GDA9UHW6 222 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 AKR1B15C9JRZ8 316 aaPredicted RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 E7EVH7 732 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 H0YIG0 161 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PRRG2O14669 202 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 TSPAN12O95859 305 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 WDPCPO95876 746 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 EIF2S1P05198 315 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 C8orf89P0DMQ9 161 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 EZRP15311 586 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 EEF1DP29692 281 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 PEBP1P30086 187 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 CCR7P32248 378 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 FOXN2P32314 431 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 FDFT1P37268 417 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CDKN1CP49918 316 aaPredicted RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 TAS2R50P59544 299 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MEF2AQ02078 507 aaPredicted RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 ZNF33BQ06732 778 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 Q0VFX4 171 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PTK6Q13882 451 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 FAM53BQ14153 422 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 EXT1Q16394 746 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MEP1AQ16819 746 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 ANKRD20A4Q4UJ75 823 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MSS51Q4VC12 460 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 ZNF766Q5HY98 468 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms