RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TRIM56Q9BRZ2 755 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 YIPF2Q9BWQ6 316 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 LHPPQ9H008 270 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ZBTB20Q9HC78 741 aaPredicted RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 FBXO6Q9NRD1 293 aaPredicted RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 AGPAT4Q9NRZ5 378 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ABCF3Q9NUQ8 709 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 GALPQ9UBC7 116 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PLEKHB1Q9UF11 243 aaPredicted RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 C3orf18Q9UK00 162 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CDC14AQ9UNH5 594 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 JRKLQ9Y4A0 524 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PCDHGA10Q9Y5H3 936 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 MAD1L1Q9Y6D9 718 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 COMMD10Q9Y6G5 202 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 SNRNP200O75643 2136 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 GOLGA6L10A0A0M3HER8 536 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 ANKUB1A6NFN9 424 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 H0YGG7 62 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 SMAPO00193 183 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PGRMC1O00264 195 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 TXNDC9O14530 226 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 ZBTB14O43829 449 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 KIF5CO60282 957 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 MED26O95402 600 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 DDAH2O95865 285 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 SLC16A8O95907 504 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 HPP00738 406 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 UQCRHP07919 91 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 MPC1LP0DKB6 136 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 ENO3P13929 434 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 COILP38432 576 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 SLC1A2P43004 574 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 CLCN7P51798 805 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 EMP3P54852 163 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 ARF3P61204 181 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 YBX1P67809 324 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 PRDX1Q06830 199 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 CTBP1Q13363 440 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 CUL1Q13616 776 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 HIF1AQ16665 826 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 LONRF1Q17RB8 773 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PRTGQ2VWP7 1150 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 TTC27Q6P3X3 843 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 CUZD1Q86UP6 607 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 DENND6AQ8IWF6 608 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 RASGEF1CQ8N431 466 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PPFIBP2Q8ND30 876 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 GABPB2Q8TAK5 448 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 DNAJB14Q8TBM8 379 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 GRK7Q8WTQ7 553 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 INPP5DQ92835 1189 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 MMABQ96EY8 250 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 MS4A14Q96JA4 679 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 C10orf90Q96M02 699 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PKP4Q99569 1192 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 EBNA1BP2Q99848 306 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 FAM167BQ9BTA0 163 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 ZNF160Q9HCG1 818 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 C20orf96Q9NUD7 363 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 C14orf105Q9NVL8 296 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 STOX2Q9P2F5 926 aaPredicted RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 KLHL42Q9P2K6 505 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 TRPC4Q9UBN4 977 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PCYOX1Q9UHG3 505 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 NOVA2Q9UNW9 492 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 RUVBL1Q9Y265 456 aaKnown RBP9.34□□□□□ -0.91
VRK3-216ENST00000599342 NUP210LQ5VU65 1888 aa9.34□□□□□ -0.91
VRK3-216ENST00000599342 PCM1Q15154 2024 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 IGLV3-12A0A075B6K2 115 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 NSG1A0A0A6YYJ2 146 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 ZCWPW2A0A1B0GU75 182 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 A1L4Q6 167 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 CBX6O95503 412 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 CXCR2P25025 360 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 ABATP80404 500 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 CDC16Q13042 620 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 PTK6Q13882 451 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 DSG2Q14126 1118 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 ZNF169Q14929 603 aaPredicted RBP9.33□□□□□ -0.92
VRK3-216ENST00000599342 TLR1Q15399 786 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 CYP1B1Q16678 543 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 NDUFA9Q16795 377 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 HKDC1Q2TB90 917 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 VWA2Q5GFL6 755 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 GARNL3Q5VVW2 1013 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 B3GNTL1Q67FW5 361 aaPredicted RBP9.33□□□□□ -0.92
VRK3-216ENST00000599342 FBXO42Q6P3S6 717 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 IGFL2Q6UWQ7 119 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 ISLR2Q6UXK2 745 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 UBE2R2Q712K3 238 aaPredicted RBP9.33□□□□□ -0.92
VRK3-216ENST00000599342 PAQR7Q86WK9 346 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 KBTBD2Q8IY47 623 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.33□□□□□ -0.92
VRK3-216ENST00000599342 FBXO15Q8NCQ5 510 aaPredicted RBP9.33□□□□□ -0.92
VRK3-216ENST00000599342 GIMAP7Q8NHV1 300 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 ZNF480Q8WV37 535 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 C8orf44Q96CB5 159 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 C5orf34Q96MH7 638 aa9.33□□□□□ -0.92
VRK3-216ENST00000599342 GPR21Q99679 349 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms