RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SAMD15Q9P1V8 674 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 C3orf18Q9UK00 162 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 UTP20O75691 2785 aaKnown RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 ANKRD12Q6UB98 2062 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 TEX15Q9BXT5 2789 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 DOPEY1Q5JWR5 2465 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 FAM237BA0A1B0GVD1 139 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 DYTNA2CJ06 578 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 MGAT1P26572 445 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 FMO4P31512 558 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 SLC26A3P40879 764 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 BDKRB1P46663 353 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 CRADDP78560 199 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 CDC16Q13042 620 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 ZNF425Q6IV72 752 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 NEPROQ6NW34 567 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 PAQR7Q86WK9 346 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 MCUQ8NE86 351 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 CALML6Q8TD86 181 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 HAS2Q92819 552 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 RERGQ96A58 199 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-211ENST00000597968 CABS1Q96KC9 395 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 RNF32Q9H0A6 362 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 XAB2Q9HCS7 855 aaKnown RBP12.97□□□□□ -0.33
TRIM28-211ENST00000597968 RIC8BQ9NVN3 520 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 SYBUQ9NX95 663 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 CIDEBQ9UHD4 219 aa12.97□□□□□ -0.33
TRIM28-211ENST00000597968 ICE1Q9Y2F5 2266 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 LOC102723996A0A087X1L8 192 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 LOC105369274A0A096LPK9 316 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 NSG1A0A0A6YYJ2 146 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 LOC102723532A0A0G2JNH3 316 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 A0A1B0GUH1 482 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 H0YGG7 62 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 GFYI3L273 518 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 ZBTB14O43829 449 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 NIPSNAP2O75323 286 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 BMP10O95393 424 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 EIF2S1P05198 315 aaKnown RBP12.96□□□□□ -0.33
TRIM28-211ENST00000597968 SERPINA7P05543 415 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 MPC1LP0DKB6 136 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 PSMB5P28074 263 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 PNLIPRP1P54315 467 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 ARF3P61204 181 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-211ENST00000597968 KCNJ11Q14654 390 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 HIF1AQ16665 826 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 NDUFA9Q16795 377 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 KLHL38Q2WGJ6 581 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 CCSMST1Q4G0I0 132 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.96□□□□□ -0.33
TRIM28-211ENST00000597968 ICE2Q659A1 982 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 FAM180AQ6UWF9 173 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 LURAP1LQ8IV03 231 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 PARP9Q8IXQ6 854 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 OR4N4Q8N0Y3 316 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 BCORP1Q8N888 145 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 GABPB2Q8TAK5 448 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-211ENST00000597968 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-211ENST00000597968 C10orf90Q96M02 699 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 OR2A5Q96R48 311 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 SLX1AQ9BQ83 275 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 DRC3Q9H069 523 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 CCDC68Q9H2F9 335 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 NTNG1Q9Y2I2 539 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 CRYL1Q9Y2S2 319 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 MAU2Q9Y6X3 613 aa12.96□□□□□ -0.33
TRIM28-211ENST00000597968 KCNE1BA0A087WTH5 132 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 TRAV17A0A0B4J275 112 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 SDR42E2A6NKP2 422 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 ARHGEF33A8MVX0 844 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 IDSB3KWA1 339 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 E7ENX8 843 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 H0YIG0 161 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 CDK2AP1O14519 115 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 SLC16A8O95907 504 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 ANXA5P08758 320 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 PRR35P0CG20 571 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 RNF224P0DH78 156 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 COX6A1P12074 109 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 CXCR5P32302 372 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 SOX11P35716 441 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 SKIV2L2P42285 1042 aaKnown RBP12.95□□□□□ -0.34
TRIM28-211ENST00000597968 KCNJ1P48048 391 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 CLCN7P51798 805 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 EMP2P54851 167 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 FOXL2P58012 376 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 TAP2Q03519 686 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 FASTKQ14296 549 aaKnown RBP12.95□□□□□ -0.34
TRIM28-211ENST00000597968 CENPUQ71F23 418 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 LRRC8AQ8IWT6 810 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 REXO1L1PQ8IX06 675 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 CSNK1A1LQ8N752 337 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 GRHL3Q8TE85 626 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 ASB11Q8WXH4 323 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 THAP11Q96EK4 314 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 NAP1L3Q99457 506 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-211ENST00000597968 PCBD2Q9H0N5 130 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 RUVBL1Q9Y265 456 aaKnown RBP12.95□□□□□ -0.34
TRIM28-211ENST00000597968 DHRS7Q9Y394 339 aa12.95□□□□□ -0.34
TRIM28-211ENST00000597968 MRPS2Q9Y399 296 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms