RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ST6GAL1P15907 406 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 IMPDH1P20839 514 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 CDH3P22223 829 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 PSMB5P28074 263 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 IMPA1P29218 277 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 CSTF2P33240 577 aaKnown RBP eCLIP14.44□□□□□ -0.1
TRIM28-207ENST00000597136 GGT5P36269 586 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 MDH1P40925 334 aaKnown RBP14.44□□□□□ -0.1
TRIM28-207ENST00000597136 NAGLUP54802 743 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 HERVK_113P63132 956 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 FOXK2Q01167 660 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 C18orf21Q32NC0 220 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-207ENST00000597136 FBXO48Q5FWF7 155 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 SPESP1Q6UW49 350 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 SUSD1Q6UWL2 747 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 PRSS42Q7Z5A4 293 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 FAM129CQ86XR2 697 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 TCAIMQ8N3R3 496 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 BMPERQ8N8U9 685 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 AGBL5Q8NDL9 886 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 UBTD2Q8WUN7 234 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 ZNF480Q8WV37 535 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 SREK1Q8WXA9 508 aaKnown RBP14.44□□□□□ -0.1
TRIM28-207ENST00000597136 ATL1Q8WXF7 558 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 RNF31Q96EP0 1072 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 SLC46A1Q96NT5 459 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 TMEM237Q96Q45 408 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 CMKLR1Q99788 373 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 ERVK-6Q9BXR3 956 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 ZNF768Q9H5H4 540 aaKnown RBP14.44□□□□□ -0.1
TRIM28-207ENST00000597136 APMAPQ9HDC9 416 aa14.44□□□□□ -0.1
TRIM28-207ENST00000597136 TLCD2A6NGC4 264 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 LRRC14BA6NHZ5 514 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 SIX3O95343 332 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ANKRD34CP0C6C1 535 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ERGP11308 486 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 NELFEP18615 380 aaKnown RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 BGNP21810 368 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ASPHQ12797 758 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ARHGAP19Q14CB8 494 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CHI3L2Q15782 390 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ZIC1Q15915 447 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PDK4Q16654 411 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CYP2A13Q16696 494 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ZNF678Q5SXM1 525 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ANKS6Q68DC2 871 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 AGTRAPQ6RW13 159 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 LRRC56Q8IYG6 542 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 OR6Y1Q8NGX8 325 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CKAP2Q8WWK9 683 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ESAMQ96AP7 390 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 L3HYPDHQ96EM0 354 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 TRAPPC9Q96Q05 1148 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 TMEM79Q9BSE2 394 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 GATA5Q9BWX5 397 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ASCL3Q9NQ33 180 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ACSS2Q9NR19 701 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 C1GALT1Q9NS00 363 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 WWOXQ9NZC7 414 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 LNPEPQ9UIQ6 1025 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ASB1Q9Y576 335 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PCDHGA8Q9Y5G5 932 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 TNPO3Q9Y5L0 923 aaKnown RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 EPG5Q9HCE0 2579 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 TOX3O15405 576 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 HCRTR1O43613 425 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 KDM1AO60341 852 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 JMJD7P0C870 316 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 NEFHP12036 1026 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 FOLR1P15328 257 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 EEF1DP29692 281 aaKnown RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 HSD17B2P37059 387 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 GDF5P43026 501 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 HSPA7P48741 367 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PNLIPRP1P54315 467 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 TSTA3Q13630 321 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 KIR2DS3Q14952 304 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PCBP2Q15366 365 aaKnown RBP eCLIP14.43□□□□□ -0.18e-35■■■■□ 19.3
TRIM28-207ENST00000597136 PTCHD3Q3KNS1 767 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CES4AQ5XG92 561 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ZCCHC23Q6ZST2 131 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CCNYL1Q8N7R7 359 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ZNF75CPQ92670 426 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 USP7Q93009 1102 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 MOCOSQ96EN8 888 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 SLC41A2Q96JW4 573 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CD180Q99467 661 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CTRCQ99895 268 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ACAT2Q9BWD1 397 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 C1QTNF3Q9BXJ4 246 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PITPNM3Q9BZ71 974 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 CD244Q9BZW8 370 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ATG10Q9H0Y0 220 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 MANSC1Q9H8J5 431 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 ABCF3Q9NUQ8 709 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 SIDT1Q9NXL6 827 aaKnown RBP14.43□□□□□ -0.1
TRIM28-207ENST00000597136 SPATA7Q9P0W8 599 aa14.43□□□□□ -0.1
TRIM28-207ENST00000597136 PTPRQQ9UMZ3 2332 aa14.42□□□□□ -0.1
TRIM28-207ENST00000597136 E7ENX8 843 aa14.42□□□□□ -0.1
TRIM28-207ENST00000597136 MATN2O00339 956 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms