RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NFATC2Q13469 925 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 WFDC5Q8TCV5 224 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 ZNF641Q96N77 438 aaPredicted RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 C1QTNF3Q9BXJ4 246 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SLC7A5P2Q9GIP4 190 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SCHIP1Q9P0W5 487 aaPredicted RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 PCDH10Q9P2E7 1040 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 RAPGEFL1Q9UHV5 662 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 A8MV72 311 aaPredicted RBP14.84□□□□□ -0.03
UPF1-204ENST00000596842 POU1F1P28069 291 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 KIR3DL1P43629 444 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 OR1E2P47887 323 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 SLC11A1P49279 550 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 C12orf4Q9NQ89 552 aa14.84□□□□□ -0.03
UPF1-204ENST00000596842 DNTTP04053 509 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 CREMQ03060 361 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 DMC1Q14565 340 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 PTCHD3Q3KNS1 767 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 POM121L1PQ3SYA9 428 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 GPR149Q86SP6 731 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 HSH2DQ96JZ2 352 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 TRPM5Q9NZQ8 1165 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 PCDHB7Q9Y5E2 793 aa14.83□□□□□ -0.03
UPF1-204ENST00000596842 ILVBLA1L0T0 632 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 TBKBP1A7MCY6 615 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 FABP3P05413 133 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 CKBP12277 381 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 CLCN4P51793 760 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 RING1Q06587 406 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 KIAA0040Q15053 153 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 ANKRD13BQ86YJ7 626 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 APCDD1Q8J025 514 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 DCSTAMPQ9H295 470 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 CLMPQ9H6B4 373 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 ITIH1P19827 911 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 CRHR2Q13324 411 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 LMNTD1Q8N9Z9 388 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 IRF2BPLQ9H1B7 796 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 PPT2Q9UMR5 302 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 PCDHB1Q9Y5F3 818 aa14.83□□□□□ -0.04
UPF1-204ENST00000596842 TANC1Q9C0D5 1861 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 EPN2O95208 641 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 PCMT1P22061 227 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 HNF1BP35680 557 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 KRT20P35900 424 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 HMGCLP35914 325 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 RPP38P78345 283 aaKnown RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 ADGRF1Q5T601 910 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SDE2Q6IQ49 451 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 FAM180BQ6P0A1 224 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 NEK5Q6P3R8 708 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 BEND7Q8N7W2 519 aaPredicted RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 DTX3Q8N9I9 347 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 FBXO22Q8NEZ5 403 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 LINC01599Q8WXQ3 324 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 FOXJ1Q92949 421 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 CHCHD6Q9BRQ6 235 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 P2RY12Q9H244 342 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 EXOSC4Q9NPD3 245 aaKnown RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 THUMPD1Q9NXG2 353 aaKnown RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 SLCO3A1Q9UIG8 710 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 Q9Y3F1 56 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 IGLV3-27P01718 113 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 PRKAR2AP13861 404 aaKnown RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 BPIP17213 487 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SDC1P18827 310 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 DSC1Q08554 894 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 GPR17Q13304 367 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 OXA1LQ15070 435 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 NCEH1Q6PIU2 408 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 DBF4BQ8NFT6 615 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SH3KBP1Q96B97 665 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 OARD1Q9Y530 152 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 H3BNC9 293 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SNPHO15079 494 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 AIREO43918 545 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 MVKQ03426 396 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 MBTPS1Q14703 1052 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 TTLL9Q3SXZ7 439 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SLC44A2Q8IWA5 706 aaPredicted RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 GLB1L3Q8NCI6 653 aaPredicted RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 SLC22A12Q96S37 553 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 COPS4Q9BT78 406 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SAMD4AQ9UPU9 718 aaKnown RBP14.82□□□□□ -0.04
UPF1-204ENST00000596842 CCL27Q9Y4X3 112 aa14.82□□□□□ -0.04
UPF1-204ENST00000596842 SLC22A1O15245 554 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ERN1O75460 977 aaKnown RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 CHIT1Q13231 466 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ZNF551Q7Z340 670 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 MYLIPQ8WY64 445 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 FATE1Q969F0 183 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 GNG14A0A1W2PPG7 69 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ZNF840PA6NDX5 716 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 OR6C75A6NL08 312 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 SOBPA7XYQ1 873 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 AQP9O43315 295 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 CYP7B1O75881 506 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 ATF4P18848 351 aaPredicted RBP14.81□□□□□ -0.04
UPF1-204ENST00000596842 MAGEA11P43364 429 aa14.81□□□□□ -0.04
UPF1-204ENST00000596842 RPS3AP61247 264 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms