RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 GNG11P61952 73 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 TBPL1P62380 186 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 DR1Q01658 176 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 TSTA3Q13630 321 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 HKDC1Q2TB90 917 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 BBS9Q3SYG4 887 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 PRR30Q53SZ7 412 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 HP1BP3Q5SSJ5 553 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 HIBCHQ6NVY1 386 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 FBXO42Q6P3S6 717 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 TRMT10BQ6PF06 316 aaKnown RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 MBOAT1Q6ZNC8 495 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 SHISA6Q6ZSJ9 500 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 PCGF5Q86SE9 256 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 RBMXL3Q8N7X1 1067 aaKnown RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 INPP5DQ92835 1189 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 PTERQ96BW5 349 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 IP6K3Q96PC2 410 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 NAPGQ99747 312 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 SOX17Q9H6I2 414 aaPredicted RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 WDR54Q9H977 334 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 LUZP4Q9P127 313 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 ZC3H7BQ9UGR2 993 aaKnown RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 SH2B3Q9UQQ2 575 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 RUVBL1Q9Y265 456 aaKnown RBP12.46□□□□□ -0.41
LIG1-212ENST00000596549 ZNF451Q9Y4E5 1061 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 HS3ST3B1Q9Y662 390 aa12.46□□□□□ -0.41
LIG1-212ENST00000596549 VSTM2BA6NLU5 285 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 H0YGG7 62 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 AGPSO00116 658 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 SOCS6O14544 535 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 HAT1O14929 419 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 SEC31AO94979 1220 aaKnown RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 TTC4O95801 387 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 TSPAN12O95859 305 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 EIF2S1P05198 315 aaKnown RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 CD63P08962 238 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 ELK3P41970 407 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 ARF3P61204 181 aaPredicted RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 PRDX1Q06830 199 aaKnown RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 SRSF1Q07955 248 aaKnown RBP eCLIP12.45□□□□□ -0.421e-6■■■■□ 21.1
LIG1-212ENST00000596549 NAA25Q14CX7 972 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 MORF4L2Q15014 288 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 STEAP4Q687X5 459 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 SLC6A19Q695T7 634 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 UBE2R2Q712K3 238 aaPredicted RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 EEF1AKMT1Q8WVE0 214 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 CFAP36Q96G28 342 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 OR2A5Q96R48 311 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 ABCF3Q9NUQ8 709 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 TRMT6Q9UJA5 497 aaKnown RBP12.45□□□□□ -0.42
LIG1-212ENST00000596549 PDE10AQ9Y233 779 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 PCDHGB7Q9Y5F8 929 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 SAR1BQ9Y6B6 198 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 TEX264Q9Y6I9 313 aa12.45□□□□□ -0.42
LIG1-212ENST00000596549 CLEC18AA5D8T8 446 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 ZNF839A8K0R7 811 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 FFAR3O14843 346 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 GPR42O15529 346 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CCNDBP1O95273 360 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 AHSGP02765 367 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 EZRP15311 586 aaKnown RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 MMP11P24347 488 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 HSD17B2P37059 387 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 UQCRFS1P47985 274 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CARSP49589 748 aaKnown RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 EFNA3P52797 238 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 ITGA8P53708 1063 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 MYBPC3Q14896 1274 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 FASTKD3Q14CZ7 662 aaKnown RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 PHKG1Q16816 387 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 ZXDCQ2QGD7 858 aaPredicted RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 FAM214AQ32MH5 1076 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 TEDDM1Q5T9Z0 273 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 VWA5B1Q5TIE3 1220 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 JMJD6Q6NYC1 403 aaPredicted RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 PAQR3Q6TCH7 311 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CLEC18BQ6UXF7 455 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 KIAA0408Q6ZU52 694 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 SYDE1Q6ZW31 735 aaPredicted RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 GALNT7Q86SF2 657 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 PLD3Q8IV08 490 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 GALNT16Q8N428 558 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CSNK1A1LQ8N752 337 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CLEC1AQ8NC01 280 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CLEC18CQ8NCF0 446 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 LINGO1Q96FE5 620 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 CABS1Q96KC9 395 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 FER1L6-AS2Q96M78 137 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 OLFM1Q99784 485 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 NAT9Q9BTE0 207 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 ZNF552Q9H707 407 aaPredicted RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 ZNF304Q9HCX3 659 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 FBXL4Q9UKA2 621 aa12.44□□□□□ -0.42
LIG1-212ENST00000596549 NXT1Q9UKK6 140 aaKnown RBP12.44□□□□□ -0.42
LIG1-212ENST00000596549 IGLV3-12A0A075B6K2 115 aa12.43□□□□□ -0.42
LIG1-212ENST00000596549 CYSRT1A8MQ03 144 aa12.43□□□□□ -0.42
LIG1-212ENST00000596549 CCDC188H7C350 402 aa12.43□□□□□ -0.42
LIG1-212ENST00000596549 PEX12O00623 359 aa12.43□□□□□ -0.42
LIG1-212ENST00000596549 ZBTB14O43829 449 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms