RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 JUPP14923 745 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 ENGP17813 658 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 FASLGP48023 281 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 PRDX1Q06830 199 aaKnown RBP24.18■■□□□ 1.46
SHMT1-207ENST00000580002 PCDH1Q08174 1060 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 SLBPQ14493 270 aaKnown RBP eCLIP24.18■■□□□ 1.46
SHMT1-207ENST00000580002 SF1Q15637 639 aaKnown RBP24.18■■□□□ 1.46
SHMT1-207ENST00000580002 LSM12Q3MHD2 195 aaKnown RBP24.18■■□□□ 1.46
SHMT1-207ENST00000580002 C17orf64Q86WR6 236 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 PLD3Q8IV08 490 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 ZFPM2Q8WW38 1151 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 C19orf60Q96EN9 201 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 RILPQ96NA2 401 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 OR2A14Q96R47 310 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 HAUS8Q9BT25 410 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 PCDHB11Q9Y5F2 797 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 PIPSLA2A3N6 862 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 PDYNP01213 254 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 ENO1P06733 434 aaKnown RBP24.17■■□□□ 1.46
SHMT1-207ENST00000580002 HOXB3P14651 431 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-207ENST00000580002 CASP2P42575 452 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 LSSP48449 732 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 E2F2Q14209 437 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 LIPJQ5W064 366 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 ATG9BQ674R7 924 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 Q6ZSR9 355 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 OR2L3Q8NG85 312 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 FAR2Q96K12 515 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 KLHL25Q9H0H3 589 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 HRASLS2Q9NWW9 162 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 STK38LQ9Y2H1 464 aa24.17■■□□□ 1.46
SHMT1-207ENST00000580002 FEZF1A0PJY2 475 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 GSAPA4D1B5 854 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 E9PBE3 544 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 KLHL41O60662 606 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 NUBP1P53384 320 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 INHBCP55103 352 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 GGTA1PQ4G0N0 100 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 PLA2G2CQ5R387 149 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 GRHL2Q6ISB3 625 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 FAM129CQ86XR2 697 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 SUMF1Q8NBK3 374 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 LOXL4Q96JB6 756 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 MAELQ96JY0 434 aaKnown RBP24.16■■□□□ 1.46
SHMT1-207ENST00000580002 MARK4Q96L34 752 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 NUSAP1Q9BXS6 441 aaKnown RBP24.16■■□□□ 1.46
SHMT1-207ENST00000580002 ACTR10Q9NZ32 417 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 LRIT1Q9P2V4 623 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 PRAMEF10O60809 474 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 SH3BGRLO75368 114 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 UGT2B7P16662 529 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 HK2P52789 917 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 HMGCS1Q01581 520 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 NKAIN2Q5VXU1 208 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 NXNQ6DKJ4 435 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 RABEPKQ7Z6M1 372 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 MTDHQ86UE4 582 aaKnown RBP24.16■■□□□ 1.46
SHMT1-207ENST00000580002 WDR20Q8TBZ3 569 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 WDR34Q96EX3 536 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 PTCD3Q96EY7 689 aaKnown RBP24.16■■□□□ 1.46
SHMT1-207ENST00000580002 AKTIPQ9H8T0 292 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 SYNPO2LQ9H987 977 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 EVA1BQ9NVM1 165 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 RAB23Q9ULC3 237 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 CCL27Q9Y4X3 112 aa24.16■■□□□ 1.46
SHMT1-207ENST00000580002 LY6G6EA0A0G2JKS1 128 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 SIGLEC6O43699 453 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 KDM1AO60341 852 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 CSNK1G2P78368 415 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 TBCCQ15814 346 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 AFAP1L2Q8N4X5 818 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 MINDY1Q8N5J2 469 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 EID2Q8N6I1 236 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 ARL10Q8N8L6 244 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 USP7Q93009 1102 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 MTERF1Q99551 399 aaKnown RBP24.15■■□□□ 1.46
SHMT1-207ENST00000580002 PCBD2Q9H0N5 130 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 MRPS30Q9NP92 439 aaKnown RBP24.15■■□□□ 1.46
SHMT1-207ENST00000580002 TCF7L2Q9NQB0 619 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 FAM86C1Q9NVL1 165 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 U3KQA8 63 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 ASXL3Q9C0F0 2248 aa24.15■■□□□ 1.46
SHMT1-207ENST00000580002 TRPC5OSA6NMA1 111 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 LCMT2O60294 686 aaKnown RBP24.14■■□□□ 1.46
SHMT1-207ENST00000580002 ULK1O75385 1050 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 CD1EP15812 388 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 DPP6P42658 865 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 BIRC2Q13490 618 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 DDX39BQ13838 428 aaKnown RBP24.14■■□□□ 1.46
SHMT1-207ENST00000580002 SF3A2Q15428 464 aaKnown RBP24.14■■□□□ 1.46
SHMT1-207ENST00000580002 XKR7Q5GH72 579 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 ABHD11Q8NFV4 315 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 OR7G3Q8NG95 312 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 SELENOMQ8WWX9 145 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 SLC38A3Q99624 504 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 SIKE1Q9BRV8 207 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 DPH7Q9BTV6 452 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 SLC29A3Q9BZD2 475 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 NLGN3Q9NZ94 848 aa24.14■■□□□ 1.46
SHMT1-207ENST00000580002 KHNYNO15037 678 aaKnown RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms