RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FDPSP14324 419 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CBR1P16152 277 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TNNI1P19237 187 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CYP2A7P20853 494 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PTAFRP25105 342 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 S100PP25815 95 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ITGB8P26012 769 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MAPK3P27361 379 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 DCKP27707 260 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PCGF2P35227 344 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 DDOSTP39656 456 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 IL12RB1P42701 662 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC1A3P43003 542 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC1A4P43007 532 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PAFAH1B1P43034 410 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 DHPSP49366 369 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CCT3P49368 545 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 PRIM2P49643 509 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CASP4P49662 377 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SERPINB9P50453 376 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SERPINH1P50454 418 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 ALDH3A2P51648 485 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BMXP51813 675 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GBX2P52951 348 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 ATXN1P54253 815 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 DRG2P55039 364 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 AQP4P55087 323 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ELLP55199 621 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 NXPH1P58417 271 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 RAB1AP62820 205 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MYBPC1Q00872 1141 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BNC1Q01954 994 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CNTN2Q02246 1040 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 LIPEQ05469 1076 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZNF91Q05481 1191 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BTKQ06187 659 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PPATQ06203 517 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC3A1Q07837 685 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CYP24A1Q07973 514 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CDH17Q12864 832 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PICALMQ13492 652 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 FGL2Q14314 439 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 RRS1Q15050 365 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 DLGAP5Q15398 846 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TBCCQ15814 346 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 STXBP2Q15833 593 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ETFDHQ16134 617 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZFP69Q49AA0 526 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 KLHL12Q53G59 568 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MANEAQ5SRI9 462 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ATAD3CQ5T2N8 411 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZNF618Q5T7W0 954 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 MANEALQ5VSG8 457 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GPR139Q6DWJ6 353 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TYW3Q6IPR3 259 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CENPPQ6IPU0 288 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TCEAL6Q6IPX3 200 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CGB2Q6NT52 195 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TMEM81Q6P7N7 255 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 DCUN1D2Q6PH85 259 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BHLHB9Q6PI77 547 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 BRAT1Q6PJG6 821 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 DEGS2Q6QHC5 323 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 KIAA1324Q6UXG2 1013 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 KYAT3Q6YP21 454 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CFAP77Q6ZQR2 320 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TRMT10CQ7L0Y3 403 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 FAM122BQ7Z309 247 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CAMKMTQ7Z624 323 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ANKS1BQ7Z6G8 1248 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GRASPQ7Z6J2 395 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 LINC00523Q86TU6 105 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 TPRA1Q86W33 373 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZFAND4Q86XD8 727 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ARMC8Q8IUR7 673 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 LACC1Q8IV20 430 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 PSTKQ8IV42 348 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 PDIK1LQ8N165 341 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 C4orf33Q8N1A6 199 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 KRT78Q8N1N4 520 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 SLC15A4Q8N697 577 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ZBTB34Q8NCN2 500 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 GMCL1P1Q8NEA9 526 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 OR5T2Q8NGG2 359 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 HM13Q8TCT9 377 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 DTX3LQ8TDB6 740 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ACTRT1Q8TDG2 376 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 UBLCP1Q8WVY7 318 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 CKAP2Q8WWK9 683 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 METTL21AQ8WXB1 218 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ATP2A3Q93084 1043 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 CPNE4Q96A23 557 aaPredicted RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 MCUR1Q96AQ8 359 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 FKBP10Q96AY3 582 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 C12orf43Q96C57 262 aaKnown RBP3.17□□□□□ -1.9
VPS35-208ENST00000568612 FBXL8Q96CD0 374 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 NXPE2Q96DL1 559 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ARHGEF26Q96DR7 871 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 ERLEC1Q96DZ1 483 aa3.17□□□□□ -1.9
VPS35-208ENST00000568612 FAM122AQ96E09 287 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms