RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ARF3P61204 181 aaPredicted RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 PRDX1Q06830 199 aaKnown RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 Q0VFX4 171 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 DHX34Q14147 1143 aaKnown RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 VWA2Q5GFL6 755 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 ATG9BQ674R7 924 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 TTC27Q6P3X3 843 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 REXO1L1PQ8IX06 675 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 DNAJB14Q8TBM8 379 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 THOC3Q96J01 351 aaKnown RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 PKP4Q99569 1192 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 SLC30A3Q99726 388 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 MESP1Q9BRJ9 268 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 FAM114A2Q9NRY5 505 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 SAMD15Q9P1V8 674 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 NOVA2Q9UNW9 492 aaKnown RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 SDR42E2A6NKP2 422 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 PHF2O75151 1096 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 VPS26AO75436 327 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 USP1O94782 785 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 CATP04040 527 aaKnown RBP15.32■□□□□ 0.04
CLN3-229ENST00000567963 MLNP12872 115 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 HSD17B2P37059 387 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 PNLIPRP1P54315 467 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 NEK10Q6ZWH5 1172 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 LAPTM4BQ86VI4 370 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 PAQR7Q86WK9 346 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 PRSS58Q8IYP2 241 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 COG1Q8WTW3 980 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 CABS1Q96KC9 395 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 SYNPO2LQ9H987 977 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 AGPAT4Q9NRZ5 378 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 TAC3Q9UHF0 121 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 C3orf18Q9UK00 162 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 MED16Q9Y2X0 877 aa15.32■□□□□ 0.04
CLN3-229ENST00000567963 ZCWPW2A0A1B0GU75 182 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 A1L4Q6 167 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 CTAGE9A4FU28 777 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 ZNF839A8K0R7 811 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 E7ENX8 843 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 SLC16A8O95907 504 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 HPP00738 406 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 LDLRP01130 860 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 F7P08709 466 aaPredicted RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 ACPPP15309 386 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 FBLP22087 321 aaKnown RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 TAP2Q03519 686 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 CTBP1Q13363 440 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 TSTA3Q13630 321 aaPredicted RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 ELOAQ14241 798 aaKnown RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 ICE2Q659A1 982 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 ZNF470Q6ECI4 717 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 ZNF425Q6IV72 752 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 DENND6AQ8IWF6 608 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 RASGEF1CQ8N431 466 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 FBXO15Q8NCQ5 510 aaPredicted RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 PPFIBP2Q8ND30 876 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 MCUQ8NE86 351 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 GIMAP7Q8NHV1 300 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 ZNF480Q8WV37 535 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 MAGOHBQ96A72 148 aaKnown RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 ZNF669Q96BR6 464 aaPredicted RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 C8orf44Q96CB5 159 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 MVB12AQ96EY5 273 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 OR2A5Q96R48 311 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 EPS8L2Q9H6S3 715 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 KLHL42Q9P2K6 505 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 CDC14AQ9UNH5 594 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 RUVBL1Q9Y265 456 aaKnown RBP15.31■□□□□ 0.04
CLN3-229ENST00000567963 SLC5A6Q9Y289 635 aa15.31■□□□□ 0.04
CLN3-229ENST00000567963 TEX15Q9BXT5 2789 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 CNTRLQ7Z7A1 2325 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 GFYI3L273 518 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 SLC26A3P40879 764 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 TSFMP43897 325 aaKnown RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 CCZ1BP86790 482 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 CCZ1P86791 482 aaPredicted RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 RELAQ04206 551 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 CUL1Q13616 776 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 THOC5Q13769 683 aaKnown RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 DSG2Q14126 1118 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ZNF169Q14929 603 aaPredicted RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 HKDC1Q2TB90 917 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 TTLL9Q3SXZ7 439 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ZNF549Q6P9A3 640 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ISLR2Q6UXK2 745 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 CYHR1Q6ZMK1 362 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 KCNMB4Q86W47 210 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 CSNK1A1LQ8N752 337 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ST6GALNAC3Q8NDV1 305 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ASB11Q8WXH4 323 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 KCNJ9Q92806 393 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 MS4A14Q96JA4 679 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 SERPINB12Q96P63 405 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 LMF1Q96S06 567 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 ZNF160Q9HCG1 818 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 XAB2Q9HCS7 855 aaKnown RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 FBXO6Q9NRD1 293 aaPredicted RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 UTP6Q9NYH9 597 aaKnown RBP15.3■□□□□ 0.04
CLN3-229ENST00000567963 PPP2R2CQ9Y2T4 447 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms