RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RNF44Q7L0R7 432 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 PRICKLE2Q7Z3G6 844 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 CEP112Q8N8E3 955 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 ATL1Q8WXF7 558 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 THAP4Q8WY91 577 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 OLFM1Q99784 485 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 ZFYVE21Q9BQ24 234 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 PLCD4Q9BRC7 762 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 SEMA4CQ9C0C4 833 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 STOX2Q9P2F5 926 aaPredicted RBP12.84□□□□□ -0.35
CLK3-216ENST00000564468 NDOR1Q9UHB4 597 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 TAC3Q9UHF0 121 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 PSAT1Q9Y617 370 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 MED13Q9UHV7 2174 aa12.84□□□□□ -0.35
CLK3-216ENST00000564468 A0A0J9YVX5 310 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 TCRBV9S1A1TA0A576 114 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 CDC14CA4D256 554 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 TXNDC9O14530 226 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 HCRTR1O43613 425 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 TSPAN12O95859 305 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ZNF37AP17032 561 aaPredicted RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 ALAS2P22557 587 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 SPRP35270 261 aaPredicted RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 GP5P40197 560 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 NAB1Q13506 487 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 NCF4Q15080 339 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 UGT8Q16880 541 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 DEFB109BQ30KR1 87 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 GRTP1Q5TC63 336 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ZNF385CQ66K41 422 aaPredicted RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 AGTRAPQ6RW13 159 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ZDHHC24Q6UX98 284 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 CTAGE3PQ8IX95 158 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ENDOVQ8N8Q3 282 aaKnown RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 PPFIBP2Q8ND30 876 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ZNF285Q96NJ3 590 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 GBP5Q96PP8 586 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 SLC6A20Q9NP91 592 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ABCF3Q9NUQ8 709 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 TMEM184CQ9NVA4 438 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 GEMIN8Q9NWZ8 242 aaKnown RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 ARL15Q9NXU5 204 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 IFT80Q9P2H3 777 aaPredicted RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 DHCR7Q9UBM7 475 aaKnown RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 TUBD1Q9UJT1 453 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 ADAMTS6Q9UKP5 1117 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 TCFL5Q9UL49 500 aa12.83□□□□□ -0.36
CLK3-216ENST00000564468 NOVA2Q9UNW9 492 aaKnown RBP12.83□□□□□ -0.36
CLK3-216ENST00000564468 BOD1L1Q8NFC6 3051 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 A0A1B0GX78 115 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 FITM1A5D6W6 292 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 FAM159BA6NKW6 160 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 DSCR3O14972 297 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 CTSVO60911 334 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 EZRP15311 586 aaKnown RBP12.82□□□□□ -0.36
CLK3-216ENST00000564468 PHBP35232 272 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 EMP3P54852 163 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 VSX2P58304 361 aaPredicted RBP12.82□□□□□ -0.36
CLK3-216ENST00000564468 TAS2R39P59534 338 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 GPX6P59796 221 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 TBPL1P62380 186 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 NKAIN1Q4KMZ8 207 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 WASHC2DQ5SRD0 308 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 C1orf189Q5VU69 101 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 PRAMEF13Q5VWM6 474 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 MLIPQ5VWP3 458 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 ZNF425Q6IV72 752 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 CAPN13Q6MZZ7 669 aaPredicted RBP12.82□□□□□ -0.36
CLK3-216ENST00000564468 FAM198BQ6UWH4 519 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 TTLL10Q6ZVT0 673 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 ADCK2Q7Z695 626 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 PAQR7Q86WK9 346 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 C17orf64Q86WR6 236 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 LRRC56Q8IYG6 542 aaPredicted RBP12.82□□□□□ -0.36
CLK3-216ENST00000564468 RERGQ96A58 199 aaPredicted RBP12.82□□□□□ -0.36
CLK3-216ENST00000564468 IP6K3Q96PC2 410 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 RBBP8Q99708 897 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 HAUS8Q9BT25 410 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 LRRC4CQ9HCJ2 640 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 GPAMQ9HCL2 828 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 SMYD2Q9NRG4 433 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 CUTCQ9NTM9 273 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 MAN2B2Q9Y2E5 1009 aa12.82□□□□□ -0.36
CLK3-216ENST00000564468 NUP210LQ5VU65 1888 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 ESYT3A0FGR9 886 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 HYKKA2RU49 373 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 CXorf49A8MYA2 514 aaPredicted RBP12.81□□□□□ -0.36
CLK3-216ENST00000564468 ALBP02768 609 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 EIF2S1P05198 315 aaKnown RBP12.81□□□□□ -0.36
CLK3-216ENST00000564468 CAPN1P07384 714 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 FAM87AP0C7U9 286 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 GRK3P35626 688 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 GCGRP47871 477 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 POLE2P56282 527 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 RPS18P62269 152 aaKnown RBP12.81□□□□□ -0.36
CLK3-216ENST00000564468 NAE1Q13564 534 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 USP10Q14694 798 aaKnown RBP12.81□□□□□ -0.36
CLK3-216ENST00000564468 TRADDQ15628 312 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 PHKG1Q16816 387 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 MUM1Q2TAK8 710 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms